Array 1 23088-23836 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCGJ01000109.1 Aliivibrio fischeri strain 5F7 5F7_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23088 28 100.0 32 ............................ ATTAGGGCTACCTATGTTGATATGTGATGAAA 23148 28 100.0 32 ............................ TATAAATACTTTCCCTAAGCGCGTGGGTAATA 23208 28 100.0 32 ............................ TATTTACAGGTCCAGGGGAGAGTGAAGTAACC 23268 28 100.0 32 ............................ TAAATAGATATGCTCGTAACGCTCAAAATCAT 23328 28 100.0 32 ............................ AATTAATAATAAAATATCACTAATATTTGCTT 23388 28 100.0 33 ............................ CTAAAATTATATGGCCCATTTGTCCTATTGTTT 23449 28 100.0 32 ............................ GTACTTTCAAACTCCCACGAAACGACACCAAT 23509 28 100.0 32 ............................ TTGAGCCTCTGCGTACCAGCTCAAGGTAAAAG 23569 28 100.0 32 ............................ TGTTTTTTGTTTTGCGCATAGTATTGTTAGTA 23629 28 100.0 32 ............................ TTTAATGCATCGCGCGCTGCTTCTTGAGCTTT 23689 28 100.0 32 ............................ TTGGTATCAAGCGGTTCAATCATCGCTACTAA 23749 28 100.0 32 ............................ TGATGAAATGACACAAGTCTATTCATCTCGCA 23809 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCAATAATGATCCGTCCATCTTCTGTTCTCACATCTATTTCTACGCCCTCTTTAAGGTGTAATTGACGAGTGAATGCGGCAGGGATAATACTTCCTAAACTATTCCCTATTCTTCTTACTTGAGTTCTCATACATAACCTCTGAGTTATAACATTGTTGCTACGTGTATATTGTAGAGCATAAGGATTTAGTGTCAACATTGTTATAACTCAGAGTGTAAAGGAAAAATATTGTATAGCGCAGGGTATGTGGTGACTAATGCGTCTTTCAGTTATTTCATCATAACCTATGACATTAGGGTACGCGGTAAATGTACGGTAGGTACTGATTAAGTTCATTAGTAACCGCCTTTTTGGTTTTTATCTAAAATAACCAAAAAATAACCGTTTAAAAATGAGCTAATAGAATCAATGACTTACAAGCATTAGAAAAAATTAGGTTAAAATGGGTGTTTTTGCTTATCTAGTTGTTGTAACTTATTTTTATGCTGATATTCTACT # Right flank : ACATTTCCAATCCATCATCACTACGCTAGTTCACTGGCTCTGTTGCAAATAATCAGATAAGGCAGAGCAACCCAATGATTACTGGTGAACAACCTCTGCATTAAATAATCGATTCATAAAAGCTACGTATGACATTAGGCTACAGGTAAAAGTCATCACCTGTATTTTGCCCTCCTTATCTCTTTGTCATTACCTTTTTGTCATGTAGTATTAGATCATTACTTAAATGACACGTTGACTCCTTCTATGTACATATTTGGCTATTTAAGAGCATCAACTAAAGAGCAAGATGCAAAACGTGCGCAAGACAGCTTAAAGTCTTTTGCTGAAGATAAAGGTGCTCGAATAGCTGGGTGGTATATTGAAAATGTTTCTGGTGCTTCATTGCAAAGACCTGAATTAATGCGATTACTTCAAGATGCAGAAAAAGGCGATGCGATCTTGATAGAGCAAGTTGATAGGCTTTCACGTCTTAATGATGAGGATTGGGAGACACTGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 41376-39428 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCGJ01000098.1 Aliivibrio fischeri strain 5F7 5F7_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41375 28 100.0 32 ............................ CGTTAGGCATGGTTAAAAATCATGTATTACCT 41315 28 100.0 32 ............................ AAAAACAAGAAAAGAACTGTTGGTTGAAAAAC 41255 28 100.0 32 ............................ TGATACCAATCAATGTGAGTTACCGCCTGAAC 41195 28 100.0 32 ............................ ACATAGCCAATCCGCTACAACTCATTGATAAT 41135 28 100.0 32 ............................ GACATCCTAAGATCTTGACACGTTTTCATCAT 41075 28 100.0 32 ............................ TTTTTTTTATAAAGAAACGCGCACACGTAGCA 41015 28 100.0 32 ............................ TTATATGTGATCGCATTCATGCCACAATAACT 40955 28 100.0 32 ............................ TAACAATGAAGACAGCATGAAAGAACGGATCT 40895 28 100.0 32 ............................ TTGGATCCAACCGCTAACACTTTGAACTGTTA 40835 28 100.0 32 ............................ ATGACCTCTGTAAGTTGCCCACCAAGATTAGG 40775 28 100.0 32 ............................ ATGAAGTAACATTCATTATTGTAAGAAGTAGA 40715 28 100.0 32 ............................ TCTGTTAGTGCATTAATTAGCATTTGTTTCAT 40655 28 100.0 32 ............................ AATACTCAACAGATACAGTGCTATCACTGCTA 40595 28 100.0 32 ............................ ATTTCCCCAAACTACTTTATGAGTCTTAGGGT 40535 28 100.0 32 ............................ TCAGTAACCCATCGCATTAAAGTATGGTAAGA 40475 28 100.0 32 ............................ TACCTGATAGAGAACTAACCACAAATCAACTA 40415 28 100.0 32 ............................ AGTAAGGGAGTAACTGAAGAGGGTCAAGCGTC 40355 28 100.0 32 ............................ TAGAGCGTAAATATCGATGATCGCACAATCGA 40295 28 100.0 32 ............................ AACCTAGCGAACGGAAATAACCATCCATAACA 40235 28 100.0 32 ............................ AGTTCATCGACTTTCTTATAATTCACGAAATA 40175 28 100.0 32 ............................ TACAACTAATGTTGGAATGTTAGCATAACCAA 40115 28 100.0 32 ............................ AGACTGGTAGAAAGGCTATGGCTGCAGAGGGA 40055 28 100.0 32 ............................ ATTAAAGCACTTAGCTGCATTGTCTCGCAGTG 39995 28 100.0 32 ............................ ATCACTAAAGGTGCTCCACCTTCATTAGAGTC 39935 28 100.0 32 ............................ TAGAAGTTACATCTAACACCAAGCACACTGTT 39875 28 100.0 32 ............................ TGATAACGCTCAGGGTGATTTTATCGCCAGAA 39815 28 100.0 32 ............................ AAACTGAAAGGCCGAAATTACCACACGTTCTT 39755 28 100.0 32 ............................ AATGAAGTCTTTATGCTGTTTAATCTTTTCTT 39695 28 100.0 32 ............................ ACCACTAAACAGGCTGATAACGGTGATTCCAT 39635 28 100.0 32 ............................ AGAAGAACTGGCAGAATTTGTAAAGCAATACG 39575 28 100.0 32 ............................ TTTTAAAAATAAACCGTGTTTAACTAGCGTTT 39515 28 100.0 32 ............................ CGACAAGGAGGCGATCTGGCTATTAGAGCTTG 39455 28 75.0 0 ..........AT........A..TT.CT | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCATGATTTGAATGGTGTAAGCTGGTTAGGTGGGCTTATTGGCTATTGTAACGTTAGTGAAATTACAGTGGTACCTAGTTCGTGTGAATATCGTATTATTTCACGAATTCAAAGCACCATGTCGCAATCTAAGCTTAAACGATTAATAAAACGTGGTTCAATCAGTGAAGAAGAGGAGAAAACTTATAAAGCTAAAATGTTTAGCAAAGGGCTCGATAATCCCTACTTAGAATTAGAAAGCAGTTCTAATGGATATAAGCATAGACGTTATTTACGATTTAGTGCGCCACAAAGTGAGCCGATACAAGGTAAGTTTGATCAGTTTGGTTTGAGTAAGTCAGCTACAGTCCCTTGGTTTTAACCAAAAATAACCTAAAAATTGCTCTTTAAAAACGAGTCAATAAAATCAGTAAGTTACAACAAGTGTTAAAAATTAGGTAAAAATGGGTATTTTTGCTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTCTT # Right flank : TGCTAGGTTTTATAAATTGCTATTAGTTGAGGAATTATTGTTTGAGAAGAGAAAGTATTTTGAATAGTTTGTTGTGCATTTTTTTGAATGGTTTGGACTTGGATTAACGGTAAGTTTACCCATTTTTTTATTGCTGTAGGTAGAGCATCAGGGTTAACGATCCATCCATTTTCATTATTACAGATGAGTGTCGACATATTTCCTACGGGGGTTGAGATAACGGGAATACCGCGTCCCATAGCTTCTAATGCAACCATAGGTAAGCCTTCATAGCGAGAGCAAATAACAAGTAATCCAATGTGTGGCCATATGGCATCCATTGAGTTTTGATGTCCGTGAAAATGAAGATTGGAAGGTGAGTGGTTTTGTAAGTCTTTTTCCATTGGACCTGAGCCATAAAAATGAAACTGTACTTTAGATAGTTGATTGGCTAGTTCAAGGAAACGATCAGGGGCTTTTTCATGACTTAGGCGTCCAACAAATGCTATTTGGGTACCTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 168275-171783 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCGJ01000054.1 Aliivibrio fischeri strain 5F7 5F7_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168275 28 100.0 32 ............................ TCAAGTTTTATATACGCTGGCGGTTGCTCAAC 168335 28 100.0 32 ............................ ACGCTATTACTTCCATTGGGCCTACCGCTTTT 168395 28 100.0 32 ............................ TGTTTCTAAATCTGTGACAACTGCACGCATCA 168455 28 100.0 32 ............................ TGCAAAAGGTGATCGCGGTGAAATGGAATTAT 168515 28 100.0 32 ............................ TAGAAACGGCACCGCACGCATTACTTTAATAC 168575 28 100.0 32 ............................ TGAACTGGTTGGGGTTGGGTCACTGTCAGGCT 168635 28 100.0 32 ............................ TAACTGGATTTCAAGCGCTTTTTCTTCTTTGT 168695 28 100.0 32 ............................ ACAGCACATCGACATTAAAATATTGAGCAACA 168755 28 100.0 32 ............................ TGACATAACTGTAAAGTTAGCGTCATCAACGC 168815 28 100.0 32 ............................ CATGAATAAGAGAGTGCCTTGTTGGGATTACA 168875 28 100.0 32 ............................ AGATTGTTGTTACCGAATTATCTTTACCCATT 168935 28 100.0 32 ............................ ACGTCGTGAACATTCTTTGATATCTACATAAC 168995 28 100.0 32 ............................ TTATCGTTAAGTCCATCTTATCAGCAGGAAGA 169055 28 100.0 32 ............................ ATCAGCTGCGTCTATGAAATTATGATTACGCA 169115 28 100.0 32 ............................ TTACCAACTTCACTTGCAGTCTTTGTCATTCC 169175 28 100.0 32 ............................ GTGTAGTCGTTTGATACATCATCGCCATTCAT 169235 28 100.0 32 ............................ CATGATAGCACCAGCTTGAACAGAACCGATCG 169295 28 100.0 32 ............................ TAACGGGTGCTTATGATGTTTCTTTGATTGCA 169355 28 100.0 33 ............................ CTTCGAATGTTACCGAGCAAGGTTCTCCTTTGT 169416 28 100.0 32 ............................ ATACAACCTGAGCAATTTCACCATCACATTCA 169476 28 96.4 32 .....T...................... TCATAGTACTTAGACTATGGATTTGGTCTAAG 169536 28 96.4 32 ...........C................ TAAAGGAGTAAAATAATGTCGAAAGCCATTAA 169596 28 96.4 32 ...........C................ AGTTCATTGACGCGCTCTCTTACTTCTTTATG 169656 28 96.4 32 ...........C................ GTATGCATCGTTAATATGCTGACAATTTCCGC 169716 28 96.4 32 ...........C................ TAAAACACCAACCAATGAAACAATGGTTAACA 169776 28 96.4 32 ...........C................ TGCAAAAGAATTAAAACTCACAAATAAAGAAA 169836 28 96.4 32 ...........C................ AACAAATAGCAAGGAATACTAATGTATGTGGT 169896 28 96.4 32 ...........C................ GCCATTAGGCTGACACTTGGCGATTTCAGCGT 169956 28 96.4 32 ...........C................ TGTAGGCGTTAAGGTTAAATTTTCAATTCCTG 170016 28 96.4 32 ...........C................ ATCAAACGGAACGATAAAAATGTGGTTTATGT 170076 28 96.4 32 ...........C................ ATTGACAGCATTCAAGTTTATATAGGGAAATC 170136 28 96.4 32 ...........C................ GTTAGTTTCATTTGGGACAATTAAACCCCAGC 170196 28 96.4 32 ...........C................ GTTCCGTCATTCTCAACCGATGCACATACAGA 170256 28 96.4 32 ...........C................ CCCCATCAACAATATATTTTATATTGTTTTTA 170316 28 96.4 32 ...........C................ TTTACTTTTATACTTAGCCATAATTAACCCTT 170376 28 96.4 32 ...........C................ ATTGATATCTTGTCCTTTACGGCGGCGATTAT 170436 28 96.4 32 ...........C................ CAATAAGTAGGTTTTTATGGTTGGTGCTGCTA 170496 28 96.4 32 ...........C................ AACAGCGAAATGATAGTAAACGGTTTGAAAAT 170556 28 96.4 32 ...........C................ ATAAACAGCGGCATCAATACAACGCTGAATAC 170616 28 96.4 32 ...........C................ TACAGCCATTATGCACGCTGAAATCCACAAGT 170676 28 100.0 32 ............................ GGCAGAGAACTAGAACCCCAACAAATTCTAAC 170736 28 100.0 32 ............................ AATTGATGACTCTTGAACAATTCTATGGAGTA 170796 28 100.0 32 ............................ ACTCAATAGCTTGGTTAAGAAGAAATTTTACA 170856 28 100.0 32 ............................ ATACGGTAGAAATTCCGGCACAACCAGAATTA 170916 28 100.0 32 ............................ TTTCGCCGTGTACCATCCATCATGATCGGCCA 170976 28 100.0 32 ............................ TCACCAAAACAAAGAGAAACCTCACCAATAGT 171036 28 100.0 32 ............................ GCTTTGATTGCCTGGCTTAACCCTATTAATAC 171096 28 96.4 32 ...........C................ TGCAACAGAATTAGCATAACGAGCGCGTGATA 171156 28 96.4 32 ...........C................ ACACGTATCACCAAGCAAAGGTGAGTGCTTTA 171216 28 96.4 32 ...........C................ AGTTGCTAGGGCTATGCCAAGAGCTAGTTCGT 171276 28 96.4 32 ...........C................ TTAACGCATTTAATTATCACATTGCGCATAAA 171336 28 92.9 32 ...........C...C............ TTAATTTTGATGATAAGTAAAGGATCTTTATT 171396 28 96.4 32 ...........C................ TTGCCAAGTTCATTTCTAGGATCTCGAACATT 171456 28 96.4 32 ...........C................ ATAAATTAAAGCTAATTTTATAAGTCTTGATT 171516 28 100.0 32 ............................ TAACCCGAATCCAGATATAGGTAATCCAACGC 171576 28 100.0 32 ............................ AGTTAAAAACGGTTGCTCACAAACAAATGAGA 171636 28 100.0 32 ............................ AGAAATATATCAGCCTCCACTTCCATGACATC 171696 28 100.0 32 ............................ ATCCGTCCCCGTCGTATTCACCGCCGCCATGC 171756 28 85.7 0 .......................GTT.T | ========== ====== ====== ====== ============================ ================================= ================== 59 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAAGCAATTATTTGAGATAAATTGGCTGAAAGGCTTACGTGATTATTGCTCTCAAACATCAATTTCATTGGTTCCAGAGGGTTGTCAGTATCGCTGTGTAAAACGCAAACAAGCTAAAAGCGCTAATAATAAACGCAAGCGTTCTATTGCTAAAGGTTGGTTGAGTGAAGAAGAAGCGACATTGAAAATTGGTAATGAACAGCAAAAAATGTTGCGCTTACCCTTTGTTCAATTAAAGAGTACATCCACAGGACAGGTGATGAAGTTATTCATTGAGCATGGTGGATTGCAAGATAAAGCGGTTGAAGGTCAGTTTAATCGCTATGGATTAAGCTCATCAGCAACAGTCCCTTGGTTTTAACCCAAAATAACCAAAAAAATGGCTCTTTAAAAATGAAGTAATAAAATCAGTAAGTTACAATAGGCAGGGGGAATTTGGTAAAAATGGATATTTTTACTTATCTGCTTGTTGTAACTTATTTTTATACTGATATTCTATT # Right flank : TTATCTAAATACTTTTTGAATGTGTTAAACCTTATATTTTTTGCGCCTTTACAATCTTTACTTTTTTATTCTGGTTAATAATAACCATTTTCATTATAGTGAATCGAAATACGAATAGTTATCACTTGAGTGTAAAGAATATGAAAAAAAGTATCGCTACAATGTTATTTGGTTTATTAGTTTCTGCATCAAGTTATGCTGAAACGATTACCGTTTCTCATCAATTAGGCAAAACGACGCTTGAGACAAAACCTCAACGTGTTGTTGTTATTGGTACAGGAACGTTAGATGCCATTGATTATTTTGGTATTAAACCAGTTGCGGTAACTCAGGCGACGACAATGCCTTCTTACTTACTAAAGTATAAAACGAAAGAATATGCTTCTTCTGGTAGCTTAAGTGAGCCTGATTTTGAAACTATTTACATGCAAAAACCGGATGTGATCATTATTGGTTCACGAGCGGTGAAAGCGTATAAAGATCTGTCTGAAATCGCGCCA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //