Array 1 454069-455561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTV010000002.1 Salmonella enterica strain S20 NODE_2_length_633254_cov_106.692228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454069 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454130 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454191 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454252 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454313 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454374 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454435 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454496 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454557 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454618 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454679 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454740 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454801 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454862 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454923 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454984 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455046 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455107 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455168 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455229 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455290 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455351 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455412 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455473 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455534 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471693-473596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTV010000002.1 Salmonella enterica strain S20 NODE_2_length_633254_cov_106.692228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471693 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471754 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471815 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471876 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471937 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471998 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472059 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472121 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472182 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472243 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472304 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472365 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472426 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472487 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472548 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472609 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472670 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472731 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472792 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472853 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472915 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473018 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473079 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473140 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473201 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473262 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473323 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473384 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473445 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473506 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473567 29 96.6 0 A............................ | A [473593] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //