Array 1 213628-211524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZH010000005.1 Salmonella enterica strain N19-2675 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213627 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 213566 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 213505 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 213444 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 213383 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 213322 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 213261 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 213200 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 213139 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 213078 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 213017 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 212956 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 212895 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 212834 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 212773 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 212712 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 212651 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 212590 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 212529 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 212468 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 212407 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 212346 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 212285 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 212224 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 212163 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 212102 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 212041 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 211980 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 211919 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 211858 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 211797 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 211736 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 211675 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 211614 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 211553 29 100.0 0 ............................. | A [211526] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232157-230299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZH010000005.1 Salmonella enterica strain N19-2675 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232156 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 232095 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 232034 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 231973 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 231912 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 231851 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 231790 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 231729 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 231668 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 231607 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 231546 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 231485 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 231424 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 231363 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 231302 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 231241 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 231180 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 231119 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 231058 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 230997 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 230936 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 230875 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 230814 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 230753 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 230692 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 230631 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 230570 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 230509 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 230448 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 230387 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 230326 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //