Array 1 16448-16045 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGGCM010000033.1 Leptospira interrogans serovar Copenhageni strain S606 contig00033, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	====================================	=======================================	==================
     16447	    36	 100.0	    37	....................................	AAAGGATCCTTTGATCAAAAGAATTCGTCCTTGATTT  	
     16374	    36	 100.0	    39	....................................	GGACATAGGACCAAACTTCCCATAATGTATCGTTATGGG	
     16299	    36	 100.0	    37	....................................	AAAGGATCCTTTGATCAAAAGAATTCGTCCTTGATTT  	
     16226	    36	 100.0	    39	....................................	GGACATAGGACCAAACTTCCCATAATGTATCGTTATGGG	
     16151	    36	 100.0	    34	....................................	AAGGGGAAAACATTCGTCACCCCGTGAAAAACTT     	
     16081	    36	  88.9	     0	.....................A........T..A.T	|                                      	G [16052]
==========	======	======	======	====================================	=======================================	==================
         6	    36	  98.1	    37	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	                                       	       

# Left flank :   AAATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATGATTGGCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCAGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT
# Right flank :  GAAGAGAAGATTTGTTTTGGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTTCGAAAAACAGTAGTTTGTTCAAAGAAATGTGGGAACTCCCACTTTAAAAAAAGTGAATTCTGGAGATCTCCTCGGGTAAGAATCGAAAATACCTAATTACAGTAGTAAACATAAATTTGTACTGACAATCATATTCCTCAGCACTTTGCCACTGTAATTGAAAGAACTGGTTACACAAATTCGATCTACCTCTGATGCCGTTTAGGCGATCCTTTCAGAAATTTCCAAATACTATAGAGAAGGTATATCATATTATAAACATGGCATGTTTTTTAGGGTATTTAAAATTATATTTTATTTTAATTTTAGAATATTCTAAAAATATTTTGTCTTTAAAAAATAAAATGGAATCCGAAAAATGAATTTCTCCGAGTATATTGTATGTCCATTCCGAACGTCATTGAGTTAAACTTTCCGGTCCT

# Questionable array : NO	 Score: 2.76
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.00,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,1.05   Confidence: HIGH] 

# Array family : NA
//