Array 1 52163-51734 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTLZ01000001.1 Parabacteroides sp. AF27-14 AF27-14.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52162 36 100.0 30 .................................... ATTTGGCATAGTATCAGTATTTGTTGTAAT 52096 36 100.0 30 .................................... TCCTACCTTTACCGGTGGGACGTTAGAGAG 52030 36 100.0 30 .................................... TAACCTAATTTGATGGTTGTATTCTGTTTG 51964 36 100.0 29 .................................... GCGTAATTATTCAGGAGGGGTAAATATGA 51899 36 94.4 30 .......C.A.......................... TTCCGAGGTCAAGGTAACGACTAAAACGGG 51833 36 94.4 27 .......C.A.......................... TGATTGCGAAATTCAGGTTAAAAGATT 51770 36 69.4 0 .......C.A........C.A....CA...A.TGTT | G [51743] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 94.0 30 GTTGTTTTTGCCTTTCAAACTAAAGGTTAATACAAC # Left flank : CGGGCAGATAAGTGACCTTGATATTAATGATACCATTTGCTCCTATTTCCATTGCTTTATTACATAAGACATTAATAGCATCATCAGAAAAAGCTTGTTTGTATTTTCCGTATTTGACTTTATGCTTATCATAGGTCTCCCCATAAATATCATCTTTCATTCCTTTGCGAACGCTCTCTCCTATAATCTCATAACCACTTTGAACTTTTGCGGATACACTACCAATAGCTTTATATTCAAAATTGACAGAATTGGCTTCTGTCATAAAAAATCCTTTGTTTGTATATTCTGAATAATCTAATACCACTGCGCTTTGTTGGTATGGAGATTTAGGAATAATACTACAGCCTGTTATGGCTGCGACGAAAATGAGAGATAATAATGTTTTCTTCATATCGTGTGAATTTAAATGTTAACAATGCTGCAAGTAAGTAAAGTTTATTTGAAATACAAAGGTTTTTCTTGATTATTTAAGTTGATAAGAGTATATATCTTAAAAT # Right flank : TTTATGCTGATGAGTCATTCGAAAGGTCTTCTAATTTTATATTTTCTATCTTCATTTTAAATTCTGCTATAATCTTTTTTGCATAGACGAAATCGTCAGAAATCTCTTTGATACATTCAGCTTCGTATTTATCATGTAAGAACATATTCCGAGTTTTAATGAGAAAAGAACTATCTATCTTTTGTTTAGTTCGTTTCTCATATTCTGTAATTAGCTCATTAAAATCATAATAATTTCCGGGAGTAGCCTTCTTTAAATCTGGGAACATCGATACCATAGCGATTTCGAAAGAATGAATGATAGGTATGATTTGTATCTGGGCTTCTTCGAAATCTAGGCATTCTCTTTTATAATTTTCATAAGGTTGAATCTTTACGCTAGAAGATATACTATTGTTTCTTTTGACTTTACTTAATACTTTATTCAAAGAGCTGATTCTTGTATCATGATGTATATAAAATAACTTTCCGTAGTCTTTTATCTTGATATCTTCTCCTTGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTTGCCTTTCAAACTAAAGGTTAATACAAC # Alternate repeat : GTTGTTTCTACCTTTCAAACTAAAGGTTAATACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 41146-41577 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTLZ01000027.1 Parabacteroides sp. AF27-14 AF27-14.Scaf27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 41146 47 68.1 29 AAG..T.AG.AT...T...A...........C....CAA.......T CTTGGGGCGAATGGTGACGGTTGGCTTGC A [41157] 41223 47 95.7 30 ...........T...T............................... TCTCCTACCAAGGTGATACCCCTGATCAGC 41300 47 100.0 30 ............................................... GGAAGAGGTGAAAGAGTTAAGAGAAGAGTT 41377 47 100.0 30 ............................................... TATACCGTTTGATAGGTACGGCACACTTTA 41454 47 100.0 30 ............................................... TGGCACGGCGCGAACGTATGGACACTGCCA 41531 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 94.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Left flank : ACCCGTGGGGGATTCGTCTGGGGTTGTCGTACAAGCAAGTTCAAGAGAATGCGTCGCTTTCCGGAGTGCTCACAGTTAAGCACCTCATTTATCAGCTCATCCTGTTTATCATATAGCCATTCGTTTTCCTTGGTCGAGAAATGGCTACAGACCCATAACGCTTGATAACTAACGGCATCATCCGGATCGAATATCAGATCGTATAGCTCTGCTTTCCGTTCTTGGTTCCCTTGTACATAAAATAATATCTCATGGATATCCTCTATATGACAGCGGCTTGATAGTCTCTCTTTTAGGTCCATTCTCAATCTTTGTTGTTGTCTCTTTATCTTTTCTGCCGTAAAGTTATAGTCTTTTTAGCAAAGTTTCCTTAGTTCGCTTACTTTTGTGCCCCATTGATAAAAGAATGGATAGATATGCGATATATGAATTTATTAAATGATTTAACAATTGATTGTAAAAATAACGGAGGGTGTTACCGAGTAAAGGATCAGTTGAAG # Right flank : CTTAATCTGTATTATATGCTGTATATCAACTAGATGATAGAATGGTTAGAAAATAAAAAAGAAAAGTTTCCAATGTAATAAATCCCGTTTTATGACGGGATTTATTATTTCTAGAAAAGCTCTAATTGTTGGCCGGGTGTATTAGGAGGTTGTACTTTTTTCCCATAGAACAACTCAATATTCCCAAATTGTTTGTCTGTAATGCACATTATTCCTATTTGCCCGTGTTCTGGTAAAAATGATTTTACTCGTTTTATGTGTACTTCTGCATTTTCTTGGCTGGCGCAATGTCGCACATAAATAGAGAACTGAAACATGGTAAAGCCATCACGCTGCAGATTCTTACGGAAATCACTATAAGCTTTCTTTTCTTTTTTTGTTTCCGTAGGTAAGTCAAATAATACCAACACCCACATAATACGATATTCGCTAAATCGATCCATGATTATTACCGTTCTGGATACACGATTCTTCGTTGCTCTCCACTGAAACATTTGTAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //