Array 1 901666-901148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011312.1 Corynebacterium kutscheri strain DSM 20755 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 901665 29 100.0 33 ............................. CTTGAGTTAAATTATGCTCATGAAGAACGCAAG 901603 29 96.6 32 ............................G GCGTCGGCGACATCTTGATCTGTGATGCGCCT 901542 29 100.0 32 ............................. CCTCCGACAGGATACCCACAGTCTCCCAGTCG 901481 29 93.1 32 ...............A............T CATTAACACCAGCGTCGTAAACCCGTTGTTTG 901420 29 100.0 32 ............................. CAAGACTGTTTTTTACCCCACACCCTAAAACT 901359 29 96.6 32 ............................G GTATCGCTGATGCTTTTGAGGCTGTTGGTGTA 901298 29 96.6 32 ............................T ATTGCCGTTTTCTTTAGCGGCGGCCACTAGGT 901237 29 96.6 32 ............................G ACCAAGATGACCAACTCCCCGTCGTCAATCTC 901176 29 93.1 0 .........T.......A........... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.0 32 GTTGTCCCCGCGCGAGCGGGGATGTTCCC # Left flank : CAGGCAATTCTGGCACATCTAATACAGTAACAGCATCCTCTACTGGCGCCTCGATAATTTCAGCCTCAGCTACATCACCCGCACCTTCAAGCAATACGGATACCGAGTTATCTTGAACATAATTTTCTTCTGATTCCTCCAAAATAGAATCAGCTACTTCTTGCGCCGAAACTACTGGAATAACGCTCAAGATAAGAACAATACTTAACACAGCAGCATTTAATGCATGAATAAAACAACGAAGCGGAAAAAATATGTTCACAACTATTAATAATATTCACTTTTATCGCAATAGTCACTAAATAATACATAAAAGTAAACGAGGAATCTTTTGCGTAGTTTTTAATCGCAAATTCCGCTTCATCTAAATGCCAAATAGAGAACATCCATGACTAAGAATCTGTTCATACATTTGTAATGGAACTTAACTCACAACCTAGATACAAAAGAAAGTGATTGTATAATCCGTAACGAGAGCCAATTCTTACTGGTTATCAAGT # Right flank : AGTGCAAAATATCTGCAAGGATGAGACGGTTATGCTCCAGGAACTTGGCCCACGATCGATTCTTACTCCTATGATTAAGGAAACCTGTTTCCAGAATCCTAAGAAAGGGGAAGACCTTTGAGTGCGCAACGAACAAAGAATCGTAGTACCGCTGCGCTGCGACGGAACATGAGCGTAAAGGAATTCGATGCTGGTTACTTTTACGCTGCAGAGCTGAAACGGTTTGCCCGGGAGATTGGCATTTCTGTAGGAAACCGTAGAAAGTTCGAGGTTGAAGATCTGATTAGATCGTTTCTTGAAACAGGTGTTGTTCCAACTAGTCAGCCGACCTTGCCAAGAAACAAAGGCGAAGAAAGAGACAGACTAGTTCTGGATGAACAGGTCCGAAACTATGTGGATGACAAGGAAACCAAGGAGTTTCTTCTCGATGCGGTGCGCAGTTCCTCACCAGGCATCAAAAAGAAGTCTGGTCAGTGGTACTGGCTCAACGACTGGAGGAG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCGAGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 905964-905752 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011312.1 Corynebacterium kutscheri strain DSM 20755 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 905963 29 96.6 32 ............................C CGAACCCCCTAGGTGTTTTCCTAGGGGGTGTT 905902 29 96.6 32 ............................A GCATCATCGAAAAACCATCACAAGAGAAAAAA 905841 29 96.6 32 ............................G AGCGCGCCCTTCAAGCCTGTCGATACTGACCG 905780 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTTGTCCCCGCGCGAGCGGGGATGTTCCT # Left flank : ATCTTCTGATAGTTTCTCTATAAAAAACAAAGTCATTGAGCTATGGGATGAAAAACTAGAACGCGTCAGCGGAGGATATAACTGGGATGACTCTTCAGGAGATGATTACCCTTGATTACAATTGTTCTCACAGCATGTCCAGCTGGGCTCAGAGGTCAGCTTAACCGCTGGTTATTCGAAATTTCCGCAGGCGTTTTTGTTGGGCATGTCTCAACTAGAATTCGTGATCGCTTGTGGTCGATTATTGTTTCCGAACTTAAAAATGGTCGTGCAATCATGGCATTCTCTACCTCCAAAAATGAGACAGGGTTTGAAATTAAAGTACACCGCCATGATTGGGAAATCATTGACTCTGATGGCATACCCCTCGTATTAAGACCAACACGTTCTAACCCAGAAAGTCCTTTACGGAAGGGGTGGTCAAAAGCATCACAGCGTAGACGTAAAAGAAAGTGAAGATATAACCCATAATCGGAACAGATCTTTGCTGGTTATTAAGT # Right flank : TTTTCTAGCTATTGCGTCACGATCATCAGCCACAGAGCCGCCACCAGCACTATCAACTTTTGGCGCGCCCTTAGAGGTCTTCTTTTCCGCCCATGCAACTAGTGCCTGCGCGGCGGCTTCTAGCTCCTCACTGTCAGCTGTTACTGGAAGCAGCTCTACAGGAACCCCGTGCTTGGCAGCCATACCAGAGCGCGCGGCTTCGATGGTTTTGCGCTGTTCGCTAGCCTCAAGCTCAGCGATACGCTCCAGCGCTTTATCAAGCTCGGTCTTGCTTTCCTCTTGCTGCTTTTTAAACTGCGCTGCAAGAGGCTCAATCTCTTTGAGCTTTGTGCGATAACCAGCGGCTTCGCGGCGTAGCTTTTCGACATACTCACGGTCAAACATCTCAGGCTGTGTATCCTGATTCTTTGCCTCGGTAGTTTTTGCTGCTACGTCGTTTGGGGTTGGTGTTTCATGTTGGCTAGTGGTTGTTTCTGTCTGATCCATTAGCTGTATCCTCC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCGAGCGGGGATGTTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1877364-1877941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011312.1 Corynebacterium kutscheri strain DSM 20755 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1877364 29 100.0 32 ............................. GTGAGATGCTTAGCGCCCTAGAGACAGTGATT 1877425 29 96.6 32 ............................C GGAGTCAACATTGGCGCGAATCGGCTTTTTGC 1877486 29 96.6 32 ............................T TCGCTTACTCCCACCATGGCACTGATCCTGCT 1877547 29 96.6 32 ............................T TCTAGATTCAATAGTGTCCTTCCTGATGTGTG 1877608 29 100.0 32 ............................. CCCGTCTTCTGTGTGTCGCTCGACCCGGTGAG 1877669 29 100.0 32 ............................. GATTAGCCAATGACTATTGCAAGCCGTGAGCT 1877730 29 100.0 32 ............................. TATGTACCCGCTGAAACATCAATTTCTTCCCA 1877791 29 96.6 32 ............................T CCGCCATGACGTTTGACGCAACTACAGGTGTC 1877852 29 96.6 32 ............................C GTGAAAAGCTTTTGTGTTTGGTGGGTGCTTTT 1877913 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTTGTCCCCGCTCGCGCGGGGATGTTCCG # Left flank : GATTTCTAAGCGCGTTAAATCAATCCACGGTAGAACGTCGCAACGCCATCGCTAGGAAGAGCTTTATACTTAAAACCCACTCGACGACTATCCCGAAATCATCACGGCTTTAAAAAGTTCTCTTCTTCTAAGCCTTAAAATAAACACTATTAATAGCTCATCAAATAACAAGATCATTAGGCTTTCACGATGAAAAATAGGCCGCTAGAAAATCAATCCAACTGGAACAAATACTTTTTAGAAAAATGATTTTTCACGATTACTCGTTACACTCACGACATACCCAACTAGCTTAAAACTCAGCTAAAATAAAGCTGAAGTTGAGGTTCAAATACACCATCATCATTGGATGACCATCAATTCCAATGCTAGGTGCTTACGCTAAGCCGCACACAATCTTCCCCAAAATGCTCTAGAGAAAAGGTAATAAAACACCACACTGTGAACGAAAAGTGAAGATATAATCGGTACATGGAACAGATATCTGCTGGTCATTAAGT # Right flank : GCAAGCACAAAGAAAAATGCCTCAGCAAGTGGTAAAAACATGGTCGCTTGCCAGCTAAATCCAGCTAGACGCAATCATATTGGCACAAGCAACATCTGCCCTACCAACAATAAGGGCGTTGTCATAAGTAATGTATCCGCTGCTCCACCGGCTAATCGGGTAAAGCTAATCACATAATCCACGCACTAAGCAGCACCACCCCTGCGGCTAGTAAGACCGGTGCAGGGGCGTCGAAAAGCGCACGAAAGCTCCACAACAACGCAGCCACAATAAGTGGTACCACAAGAAAATTACCCACCATAACCCGATAATGAAATGATTGTTTTTCTAATCGAATTGGTAACTCAGCAAAAGTTACCAGCATCAATGCCATCAATAGTGGAGTAATAAACACCTGCCACGGTGCATTGATTTTACTAGCACATGCACCGGCTACTAAAGCAAGTAAATAATAAATTGCAGAACGCATTAATGGTAGCAGGCTAGCAATCCGCCAGGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCTCGCGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //