Array 1 44146-38957 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDX01000124.1 Shewanella algae strain CLS3 NODE_8_length_53390_cov_86.987473, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44145 28 100.0 32 ............................ ATTAAAGATTTGTCAGAGTCTCTTAGCAGCTC 44085 28 100.0 32 ............................ TTGATTTGTTCATGGAGTATCTTGTTAATCCT 44025 28 100.0 32 ............................ AGTGCTGCGAACCGGGGTGCCATCAAGCTTCA 43965 28 100.0 32 ............................ AGCACCGAATTTGTTGCGGATGCGCTCGATAG 43905 28 100.0 32 ............................ GCCGAATGGGGTAACGATTTCGAAGCGTTGAA 43845 28 100.0 32 ............................ CGCCAAATGTGCAGGCTCCACCGACAAACGTT 43785 28 100.0 32 ............................ TGTGGCCAATAAAAAGGGCTGACGGTTGGAAT 43725 28 100.0 32 ............................ TAGTAGCAGAGATTCAGCTAATGACATGTGAC 43665 28 100.0 32 ............................ CAAGGGTGTGGCCAAGACTTCTGGCAAACCCT 43605 28 100.0 32 ............................ AACTCGCTGCAGTCTACCAACTACGTCTCGCA 43545 28 100.0 32 ............................ AACAGCAAAAATCAGGACGCACAACAGGCAGA 43485 28 100.0 32 ............................ AGCTCCCTCACGGGGCTGGCGACTTGGCTGCG 43425 28 100.0 32 ............................ ATTTTGCCTGACACTTCCTGAGCCAACGCCTG 43365 28 100.0 32 ............................ TGGACAGAATGGAGTCAATCGTGGAGGTTATC 43305 28 100.0 32 ............................ GTGTACCCTTCACCCCATGCCAAAACCACCCC 43245 28 100.0 32 ............................ AAAGCCGCGGCGCTTCTCTCGACCGCCGATGC 43185 28 100.0 32 ............................ CGGCGTGTTTGTAATACAGGGCCGTGACAGGT 43125 28 100.0 32 ............................ AAATTGCAGCAGCTGTGCCAGTACCTCGCCAC 43065 28 100.0 32 ............................ TGTATTTGCGGCGCTGGTCGCCGGACGAGATC 43005 28 100.0 32 ............................ GTGTGGGAGTCGTTCCCGTTATGCGTCTGCCG 42945 28 100.0 32 ............................ TCAATGCAGGGACGTATCGCAACAATGAGTCG 42885 28 100.0 32 ............................ AGGCGATGACGCGATAGACCTAACGTCAGAAT 42825 28 100.0 32 ............................ ATGCTATGACCGCATTTGTGTTAGGAACATGC 42765 28 100.0 32 ............................ GCACCGAGGGCGTTGTGAGGTTGCTCAGCTTC 42705 28 100.0 32 ............................ GGCACTGAGTTGCACCTTGCCCGACTCGACAG 42645 28 100.0 32 ............................ TGCTTTGTTGGCTCAGCGACTACGGAGCCGAA 42585 28 100.0 32 ............................ AAAAGAGGGCGATATCACCATCGAGTGGCCCA 42525 28 100.0 32 ............................ TGCACGTAGGCGGGAGTCTTGTCATCCCAGTC 42465 28 100.0 32 ............................ TGGCGGGCACGGTTCAGTTCGTACATGTTCAC 42405 28 100.0 32 ............................ TTTCATGATGCCCCCTGTTAACTGACTGATTT 42345 28 100.0 32 ............................ AGTACCCGCATTAATCGGTATCCCTGCGTTAA 42285 28 100.0 32 ............................ ACTGGGAAGCATATTATCAACGTTGCCGAATA 42225 28 100.0 32 ............................ TCTGATTCAGCACCGCTTATTGAGCGCTGGTA 42165 28 100.0 32 ............................ AGTCAGGAATAAAAGAGACCGAAGTGCTTAGA 42105 28 100.0 32 ............................ TTAGGGTTGACCTTATTTAACCTGGTTAAATC 42045 28 100.0 33 ............................ ACAGAGTGACCACAGATATTGAATCGGGCAGTG 41984 28 100.0 32 ............................ CTCATAATCAAGGCCGCCGATGACAAAGTCTT 41924 28 100.0 32 ............................ ATTCGCAACAGTGCCGTCGGCACCAACAGTTA 41864 28 100.0 32 ............................ GATAGTTACATCAGGGCGCAGTAACTCTTTTT 41804 28 100.0 32 ............................ AAATAGCCATGCGCCTGCGGGCACTGGAAGCC 41744 28 100.0 32 ............................ AATATGGAACTGCCATGTATCTACCATACTTG 41684 28 100.0 32 ............................ CGCACCCCTAACCGCAAAATACTGCTCGCCTT 41624 28 100.0 32 ............................ ATTAAATTTTGCTTGGTTGAGTGTTTCATAGT 41564 28 100.0 32 ............................ TATCAGGCACTCGGCAAGTTAACGAGGTTCGC 41504 28 100.0 32 ............................ AGCATCTGCCGAAGGAGGTTCAGGCATGGATG 41444 28 100.0 32 ............................ AGGTGAATGAGAATGCATTCATCAAGTCACTG 41384 28 100.0 32 ............................ ACTTACAGCTTTCGTACCAGACCGATGATGAT 41324 28 100.0 32 ............................ AAGTGATTGCGTTATCGAAAAGGTGAACAAAG 41264 28 100.0 32 ............................ AATCTAGTACAGGCTTCCAGTCTGCATCACTG 41204 28 100.0 32 ............................ TGTGAGCTTCTCGTTAGGGTCAATCAGATACT 41144 28 100.0 32 ............................ GATTGGGTCGGTAAAAAATGATAGGGGTTATT 41084 28 100.0 32 ............................ TGTTAACCAGGTCGCGGCGGCAGCGAAGGCGC 41024 28 100.0 32 ............................ GTTACCAATCATTACAGAAATTGGAGTGACAT 40964 28 100.0 32 ............................ ATACGGTTTCTTCGGGTTCACCACTTTGGCCC 40904 28 100.0 32 ............................ GTACTTGGTCTGTTTCACCGACTTGATAAGTT 40844 28 100.0 32 ............................ TCACTCAGTGCAATTGCCATCGCTTGCTTGCG 40784 28 100.0 32 ............................ ACCGGCCTTGTATTCACAGGGTACGGTGATGG 40724 28 100.0 32 ............................ AGCCATGGGCGCGCCGGTATGTTAATCGTGTG 40664 28 100.0 32 ............................ AAACACTACTGCGAGAGTGTTTGGGATGTGGA 40604 28 100.0 32 ............................ AGACTAAATCAAAGGCATTGCTTTACATGCTT 40544 28 100.0 32 ............................ AACAGACTTCAATCATGTCCTTAAGATCACGA 40484 28 100.0 32 ............................ ACCTCCGGCGAAGTTGTCTATTACCAGCTCAT 40424 28 100.0 32 ............................ TGTTGGAGATTTGGGGCTAACTGGACGCATCC 40364 28 100.0 32 ............................ GTAACGGAAGCGCCAAAAACTGAACCCGTAAC 40304 28 100.0 32 ............................ CATCGGCGAACATCCAGCATTGCTTGTTGGGC 40244 28 100.0 32 ............................ GCCGTCACATTGCAAAATTGGGGGCGGGGAAA 40184 28 100.0 32 ............................ TAAAGTATCCAATCCGACCAAGCAGGAAGCCA 40124 28 100.0 32 ............................ ACTGGCGCGGGCTGAACTTTCAGCACCATGTG 40064 28 100.0 32 ............................ CAACCCCTTGTAATCCGGGTTTGGCTCAATAC 40004 28 100.0 32 ............................ TTTTTCCCAGCGTTGCCAGGTGCGAGGCTCAC 39944 28 100.0 32 ............................ TCAATAACTTTTCGACGATTGTCACTTTTAAT 39884 28 100.0 32 ............................ TACGGCCATTTTCTCCACTCGGGTCGGGTCAT 39824 28 100.0 32 ............................ ATCATCTACCATTACATCGCAATACTGAGCAA 39764 28 100.0 32 ............................ TATAACCGCCAACTGTTGTGCCTCACCGATGG 39704 28 100.0 32 ............................ TGTCCAGGGCTCCAAAGTCTGGCCCATCGTTT 39644 28 100.0 32 ............................ AATTCTGAAGGGAACGTGCAGCACAGAGCTAA 39584 28 100.0 32 ............................ TGGCGATACCAGTGGCACAGGTCGAACCGACA 39524 28 100.0 32 ............................ TAAATATACACTCAACTAATGTTAGGAACTGT 39464 28 100.0 32 ............................ ATCACCCCACGCCCACGCTCAAGCATGGTCAT 39404 28 100.0 32 ............................ TGACATTTCAGAGGTGCATGGCCTTGTGAGGG 39344 28 100.0 32 ............................ TGACAGACACCGTAGAAATCACATTTCTCGTT 39284 28 100.0 32 ............................ TGTTGGCGGTATGCCCACCGATGCGACACCTG 39224 28 100.0 32 ............................ GTTACTTATGAGCCGTCTCGGGGTCGGACCGA 39164 28 100.0 32 ............................ GACCAGGACGACGCGATCATCAAGCGTTACGA 39104 28 100.0 32 ............................ TGTATTTGCGGCGCTGGTCGCCGGACGAGATC 39044 28 96.4 32 ............T............... AGTTAAATAAATTCAAGTCAGTAACTGACAAC 38984 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================= ================== 87 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGTATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTGTTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACATTCTTTTATTGCTTTATTCTATT # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTCGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAACGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGTTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //