Array 1 118655-110616 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037979.1 Rathayibacter toxicus strain SA19-14 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118654 29 100.0 32 ............................. TCTGCGCACTGGGCCATTACTGGGCAGCGTCT 118593 29 100.0 32 ............................. TAACCAACCGACCACCATACATAGATTGGACC 118532 29 100.0 32 ............................. ATCTGGTTGGGTCGCCTGGTTTTGGGCGCGTT 118471 29 96.6 32 ............................T GAGGTTCGGGGAGAGTCCTCTAGAGCAGCTAG 118410 29 96.6 32 ............................G GGAAAGCACATTGTTAGGCTCGTTCTCAGCTC 118349 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 118288 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 118227 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 118166 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 118105 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 118044 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 117983 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 117922 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 117861 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 117799 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 117738 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 117677 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 117616 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 117555 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 117494 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 117432 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 117371 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 117310 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 117249 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 117188 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 117126 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 117065 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 117004 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 116943 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 116882 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 116821 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 116759 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 116698 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 116636 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 116575 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 116514 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 116453 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 116392 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 116331 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 116270 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 116209 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 116148 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 116086 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 116025 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 115963 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 115901 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 115840 29 96.6 32 ............................G CTATCTGCTCACAATGGCAGACCAGCACGGCG 115779 29 96.6 32 ............................G TCCGCCGGGAGGCGCAGGCGGCTGGTAGCGAA 115718 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 115657 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 115596 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 115534 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 115473 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 115412 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 115351 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 115290 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 115229 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 115168 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 115107 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 115046 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 114985 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 114924 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 114863 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 114802 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 114740 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 114679 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 114618 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 114557 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 114496 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 114435 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 114374 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 114313 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 114252 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 114191 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 114130 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 114069 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 114008 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 113946 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 113884 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 113823 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 113761 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 113700 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 113639 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 113578 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 113517 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 113456 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 113395 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 113334 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 113273 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 113212 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 113151 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 113090 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 113029 29 96.6 32 ............................T ACAAAAGGAATACCCAAGCCTTCGATTCTTTA 112968 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 112907 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 112846 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 112785 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 112724 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 112663 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 112602 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 112541 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 112480 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 112418 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 112357 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 112296 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 112234 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 112173 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 112112 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 112051 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 111990 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 111928 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 111867 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 111805 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 111744 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 111682 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 111621 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 111560 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 111499 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 111438 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 111377 29 100.0 32 ............................. CCAATACTATTAATGCGCAATCCAAGAAAACG 111316 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 111255 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 111194 29 96.6 32 ............................G AAACCATCGACCTAATCCTAGAGGCAGGCGAG 111133 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 111072 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 111011 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 110949 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 110888 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 110827 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 110766 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 110705 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 110644 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================= ================== 132 29 97.7 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : CAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTCA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //