Array 1 6165-4874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNO01000005.1 Listeria monocytogenes strain NRRL B-33372 PROKKA_contig000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6164 36 100.0 30 .................................... CACTTAGAATTGAAATATTTCAAAATAAGA 6098 36 100.0 30 .................................... TTTACACCCGTCAGCGTTTGTCACTCGTGA 6032 36 100.0 30 .................................... TATCGCTATTGATATTATGACTGACCCCAA 5966 36 100.0 30 .................................... TAGCAACTCCGTGAATATTTGGATTGTTCC 5900 36 100.0 30 .................................... TTCAGATGATGATTTACCATTTTGAGCGAA 5834 36 100.0 30 .................................... TAAGAAAAGGTGACATGCTACAACGAGAAG 5768 36 100.0 30 .................................... TTTATCTAGTGGGTGGCTTTACGCGGGAGT 5702 36 100.0 30 .................................... TATGTTGGCGAACGTTGATAGGTTTGTGGT 5636 36 100.0 30 .................................... TCAAAAATTTTGACTAAAAGAGATGCATGG 5570 36 100.0 30 .................................... CAGTAACCCTTATAGTATTAGCCTCAGTGT 5504 36 100.0 30 .................................... TGGTGAGAGTGACGGTCTATATAATTTCGT 5438 36 100.0 30 .................................... TTGGCTTTCTGCAAAAGATGCATTGGGGCA 5372 36 100.0 30 .................................... TTCAACCGATGAAGCATTCTTTTTGTATCA 5306 36 100.0 30 .................................... TACGAATCAAAACGGCGAATTTATCCAGAT 5240 36 100.0 30 .................................... TTGTTGTGATGCATCTTGCAGACGCAGACT 5174 36 100.0 30 .................................... GTTTTTAATTCCCGCAAAAACGAATATCCC 5108 36 100.0 30 .................................... GATAAGCATCACCCAATTCTTCAGCATCTG 5042 36 100.0 30 .................................... ATTTTTTTAGTTCTTTCAACCTGTTTTTTT 4976 36 100.0 31 .................................... TCTAGTTCATCGTTACACGGCTATAGCATAG 4909 36 72.2 0 ........A................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGTATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAGTCTTGGAGGAAAGGAAAAATTCTGCGAG # Right flank : AGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAGACATCAATCATTTTTATTTTTTGCGCATTCCTCCTAACAGCCTGCTCAACCACCCAAAAACAAACACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAGTCATTTTAACAAAAAATTTCCCAATCCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACATACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTTTTTCTTAAAAAAACAAACTCAAATTCCTTGCCTTGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 277901-278577 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNO01000015.1 Listeria monocytogenes strain NRRL B-33372 PROKKA_contig000015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 277901 29 100.0 36 ............................. ACCTTTATCAGTGCCGCGGATAACTCACCAGCCGTA 277966 29 100.0 34 ............................. TCACTTCTTGATAAAGCTTAATCGATTTTTCCAG 278029 29 100.0 36 ............................. ACGATCTGCCGCACCAAGGACAATATTCGACTGGGA 278094 29 100.0 37 ............................. ACTTTGTAAGTGGTATAAACAATTAACGATAACAAGA 278160 29 96.6 35 ............A................ TTTGCAGGAATCACTTTACCAGTTGTTGTATCTTT 278224 29 100.0 36 ............................. CCCGGAAAGTCTGGGCTTAATAAAGAAAAGAATCTT 278289 29 96.6 37 ..............A.............. ACAGTTGCATACTTAGCAATTCTTTTCATGCTGTCCT 278355 29 96.6 36 ..............A.............. TGAAATGCTTTGATTGCAACCACATATCCATCCCGG 278420 29 93.1 36 A.............A.............. CTTGCAAAAAACACACGAACTATAGCAATTGTGCAC 278485 29 100.0 35 ............................. GGAATCACGGACAGTCAGGCGAAGATAACTACACT 278549 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 96.9 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTAGAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCAATACACAACTCCACCACCATCCAACAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAAGCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATAGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 295380-296576 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNO01000015.1 Listeria monocytogenes strain NRRL B-33372 PROKKA_contig000015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 295380 29 100.0 36 ............................. GTCGCCATCTTGATCATATAACGCTTTTGCATCTTC 295445 29 100.0 36 ............................. TGCAATAAAGTAGAGTATTGCATTTTAATCATCATC 295510 29 100.0 37 ............................. AATATTTAATTCATTCTCCGTTTTCTGGAGGGGTAAC 295576 29 100.0 36 ............................. CTTTCTATCACTGCAATCCCCTTAAACTCTACTGTT 295641 29 100.0 34 ............................. AATGTAGCACGAATGATTTTTTTGTATTCTTCAT 295704 29 100.0 34 ............................. CGGATTCATTTGCTGGTTAGGTCGTTTGTTAAGC 295767 29 100.0 36 ............................. GATATTATATTGTGCGAAAATATCGGCAGTTGATTC 295832 29 100.0 35 ............................. AGTAATGAGTAGCGATTAAATTCTAACGCCTATTC 295896 29 100.0 37 ............................. GAACACGCGCCAGAAAAATGGGCCAAATTCATCGAGT 295962 29 100.0 36 ............................. TCGACTGAGTCCCACGTCCACGTGATTGAGTCATCC 296027 29 100.0 34 ............................. TATTCTCTTTTAGCTAGCTCTAGCTGCTGCTCTA 296090 29 100.0 36 ............................. GAAAAAAGGCATATGTATCTCAAAGCGAACGCGAAA 296155 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 296219 29 100.0 37 ............................. TTCGAATCCTTCCGCTTTCATAGCAGCAACAACCTTT 296285 29 100.0 36 ............................. TTTCAACTGAAGCTACATGTACATGAATATTATCTG 296350 29 100.0 37 ............................. AGACGAACAGCTAGAAGCATTGCAAGAAAGCGATGCT 296416 29 100.0 36 ............................. AGAGATTACAGAGCAAAAGGATGCTTTAATCGCAGA 296481 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 296547 29 93.1 0 .......................A....C | C [296570] ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGAAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAATACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACATCAAATTTCTTTTGATGTCCTTGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGAGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAATGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //