Array 1 205900-207148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQHJ010000002.1 Escherichia coli strain ARS-CC9553 NODE_2_length_263877_cov_29.8468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 205900 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 205961 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 206022 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 206083 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 206144 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 206205 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 206266 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 206327 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 206388 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 206449 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 206510 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 206571 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 206632 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 206693 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 206754 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 206815 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 206876 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 206937 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 206998 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 207059 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 207120 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 222650-224327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQHJ010000002.1 Escherichia coli strain ARS-CC9553 NODE_2_length_263877_cov_29.8468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 222650 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 222711 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 222773 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 222834 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 222895 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 222956 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 223017 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 223079 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 223140 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 223201 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 223262 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 223323 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 223384 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 223445 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 223506 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 223567 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 223628 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 223689 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 223750 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 223811 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 223872 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 223933 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 223994 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 224055 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 224116 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 224177 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 224238 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 224299 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //