Array 1 2168445-2166301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042464.1 Prevotella copri strain YF2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2168444 33 100.0 34 ................................. GGTTTAGGTGCTGCTGCTATTGCTGGTGCTGGTT 2168377 33 100.0 33 ................................. TTCTGATAAGGTTGAAAAGACTAAAGCTTTTAT 2168311 33 97.0 34 ................................C TTATCGAGCCAACGGAGATTTGTATCAGCTAGCT 2168244 33 100.0 34 ................................. GAAATGCAAACTGAGCAATCTGAGACGCAGCAGA 2168177 33 100.0 32 ................................. TTCTGGGCAATGCCAGAAAGAAGACCGCCGGT 2168112 33 97.0 34 ................................A GTAATTTGCCTTTAGATTATTTCACCGGTGTTCT 2168045 33 97.0 33 ................................C TTTATCATCTTTGAACGAACATTTTGTGGGCTG 2167979 33 97.0 32 ................................A GAGCGTATGAAGAAGTTTATCGAGATTATCAC 2167914 33 100.0 32 ................................. CCTTGCCCGAGGTTTTCAAGTCGCAAACGACC 2167849 33 97.0 34 ................................A CGACAGCACTCAAAACCAAGTTGAACGGCATCGC 2167782 33 97.0 32 ................................A AAAAGCCAAAGCAGCAGGAAGCCATCGCACAG 2167717 33 97.0 33 ................................A AGTTCGGGAGGTCTTGACCGCACACCGTGATAA 2167651 33 97.0 34 ................................G TACTGGTTGCCGAATGTCAGCGTATCTTCGCTTT 2167584 33 100.0 33 ................................. TTAACTATTTAAGCAGACGGTAAGAGCGTATGG 2167518 33 97.0 34 ................................A AAGACCACTCATTTTGCTGAATGTTCAAGTCAAG 2167451 33 97.0 33 ................................G GGTCAAAATATGTCAAATGATATACAGCGTTAT 2167385 33 97.0 33 ................................C AAAAAGACCACCAAGTAAAGAACCAGCAACACC 2167319 33 97.0 32 ................................A AACTGAGAGCGGAAATTCGATGTATCAATCAT 2167254 33 97.0 33 ................................A TATTGTCAGAAGGCGAAACATAATCAATATTAC 2167188 33 97.0 33 ................................A AAGGTTACAGACGGCAACATGCAAGAATATGTT 2167122 33 100.0 33 ................................. GAGCCGCTTACGTGGTAAGCACGCAAAACTATC 2167056 33 100.0 34 ................................. CAGAGAGGAGGTAACAAATGAGGAAGATTATAAA 2166989 33 100.0 32 ................................. TCGTCCCAGCTGCCAAAATAGACGTTATCCGT 2166924 33 100.0 32 ................................. TAGTAGGATTGAGTTTTTGGAAACGGCATACA 2166859 33 97.0 33 ................................A CGCTTCGGGCGGTAAATTATAAGGCAAACAGAT 2166793 33 100.0 32 ................................. CCTAATAGAAGCTGTTCATTATTGCAAAAAAC 2166728 33 100.0 32 ................................. CGCAACGTCTGAGCATCGGCACGCATATTGTC 2166663 33 100.0 33 ................................. GGTCAAAATATGTCAAATGATATGCAGCGTTAT 2166597 33 97.0 32 ................................A GAATAGTAACGACCCCGATTTTGCTAATCAAG 2166532 33 97.0 33 ................................A TAGAAATCCAAACCTAGAAAGGCGGATAGCGAA 2166466 33 100.0 33 ................................. TTGCTAGAGGTTAAAACCACTTATGTAGGTTAT 2166400 33 100.0 34 ................................. TTTTATTGCAAGTAATACACAAAGAGTTAAGTAA 2166333 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 33 33 98.4 33 GTCACACCCTTCGTGGGTGTGTGGATTGAAACT # Left flank : TGATGATTATCCAGTGTTTTTAATCAAGTAGTGTATGTTTGTATTGATTACTTATGATGTAAACATTACCTCGGCTCATGGTGCGAAACGTTTACGCAATGTAGCAAGGGCGTGTTTGAATTACGGAAAGAGAGTTCAAAACTCTGTTTTTGAGTGTATTTTGACGGAATCTCAGTTTTTCGTATTGAGGGACCAGTTGAAAGGGATTATTGATACTGAACAAGATAGTATTAGGTTCTATATTCTTGGGAAAAATTGGAAACGTAAAGTCGAGACTTTGGGTAAGGATATGGGGCTTGACTTTACTGGTGAGCTTATCATTTAATGTATGAGGGTGCGAACCTATAGTATTGCAAAATAACCTATAGTTTCGCACCTTCTTAAAATCAGTGACTTACAAATATTATGCCTTTTATAATATTTTACGTGTAATTATTTTGCCATCTTTCGCAAAATAATTATCTTTGCATCATGATATTCAGCTATTTGCTGAATATGCA # Right flank : GAAAACAGATTTTATTTTCTGAGCCCACTTGAAAAAGTCATTTTTACGAAAACGTGCCATTGATTGTCAATAAGTTACAATGACAAAAAATATGATTCGGGACTTCTTTAAGTGGACTCAGTTTAGTATTATACAGCAATCTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCAGCCACAGCATTCGTCTCCTCCGGTCACTGCATTCGATTCCTTCAACTATCGCATTCGTCTCCTCCGGTCACTGCATTCGACTCCTTCAGCTATCGCATTCGTCTCCTTCAGCTATCGCATTCGACTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAACTCGTGAAATGAAGTGGATGAACTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCATGATTTCTGCATAATAATTAATACATGCGAATGGTAAAGCAAAAAGTGGTTGTTCGGAATTCCGAACAACCACTCTACATGGTGCTGTTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2295035-2293836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042464.1 Prevotella copri strain YF2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2295034 37 100.0 35 ..................................... TGGATACGCCCTTCTCCTCAAGATAAGACGCACAA 2294962 37 100.0 37 ..................................... ATTTTATCATCATAGTCATCAGTAAACTCTACATGAT 2294888 37 100.0 36 ..................................... TATTCATAATAAGTTCTCCTTATTTTAAAAATTAAT 2294815 37 100.0 33 ..................................... CATTTGCTTCCAAGACTCATCTGTTAACTCGTT 2294745 37 100.0 33 ..................................... TTTTTAGCTTTATTCTTATGTGAATAGTAAGTA 2294675 37 100.0 40 ..................................... TAGTTCTCCTATTTTTATTAATACGTTTATTAGCAGTAGA 2294598 37 100.0 36 ..................................... TAAGTACACCGCCCATAGTTGACCAATGACCAGTAA 2294525 37 100.0 36 ..................................... TAAGTACACCGCCCATAGTTGACCAATGACCAGTAA 2294452 37 100.0 36 ..................................... TGTAGGATTGTCGGTCTCCTGCATCATCTTTGACAC 2294379 37 100.0 35 ..................................... AGGCTCAATACTCAGTATCTGAGTATCAAATCTAT 2294307 37 100.0 35 ..................................... ATTAGCATCCATTCCTCCAAGATAACCACGAGTAT 2294235 37 100.0 36 ..................................... AACTTCTCTGCTACCATTCCTCTTACCTGACCACAA 2294162 37 100.0 35 ..................................... TTTGTTCCTTTCGATCCGATATTTTTTTTATCATT 2294090 37 100.0 35 ..................................... AAGTTAATCATTTGTATAATTGTTATAATGTTATA 2294018 37 100.0 35 ..................................... GGATAGACATTAATGCTTGCACCATTGCAAGCTGA 2293946 37 100.0 38 ..................................... CAGGCAAAGAAGCACATTGTTGCTCCTGAAGCATGCAC 2293871 36 91.9 0 .....................T...........-..A | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 99.5 36 GTACGAGACCATTGTCCACTACAACAAGGATTAAGAC # Left flank : CGATCTCCATATGTTTATGGTTTTGATTTCTGGGTGCAAAGGTAAAGCGGGATTTTGAAGTGGTATTTCACTGACTCGATTTTCTAGGATTTTGTTGGTTAGTGGTTGATTTTTACACCTTTTATGGGGTATGGATTATTCGTTCATCACTTTTCTTGTTGTCGTTAGAATCTTTAATGGAGGGGAGTAATGGATATGTAGGATTCATGGTTAATGGTAGGAGATAGCCTTCTTTTTCTGAAGTTTGTTAGTGCTGAATGGTGGGGTGGTGGGTGGTCTTGTCGTTTGTCTTTAGGTTTCTGTCTCCCTATTTGGTTAACAGAGTTAAATTTTTGGGATAAAATGGCTAAATATTTAAGAATAATTGGCTTGCATATCTCGAAAAAAAGTCGTACCTTTGCACTCGCTAAGAAATAGTTAATTTTCGGTTAAGAAAGGTAAATATTTGTTTAGTGAAGTTCTTTAACTTATTGATAATCAATAATGTCTTATAAGGTTGA # Right flank : TCATTTGTTTGTGAGTTATTCATAGGTTATTTTGGTTCATTGTTAGGGTTTACTGTTACATGAAAAAATCCCATATCAAGGTTGGTTGCCTTGGTATGGGATTGATTTTAATATAGTGATTTGCTGTTCTGTTCAGGTCTGTTTGGACCTATCCTTTTTTACTTCTGGTAGGAATCATAGAGTTCCTTGGCCTTGTCTTTGCCTAGGAAACCGGACAGTTTTTTCCAGATTCCACTCTTGTCAAATGGTTTGGCAAGTTCCTTCACTTCCTTCTTGGATGGATCCTGTAGCAAGCGGGTTGAGGTATTGAAGAGGGCGTTGCTGTCGGATTCGTTGAGCTGTGATGTCTTGAAGTCTTTCAGCCATTTTTCCACCTTCTGGAAGCATACCTTGAAGTCCTTGATACTATAGTTTACGCCATCTCCAGCGAGTTTATCAAGGGTGGTGCCAAGACCAGCAGCATGTTCCTTTTCTTTAGCTTCCTGAGCAGCCTGTGCTGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATTGTCCACTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 2304898-2304124 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042464.1 Prevotella copri strain YF2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2304897 37 100.0 37 ..................................... CGCCCGCATCCTTGCGAATCTTGTTCAACTCTTTCAA 2304823 37 100.0 35 ..................................... CCCTTTGCATTGAATGTTGCAATATCATCAGTGAG 2304751 37 100.0 39 ..................................... GACTGAAATTTTCATACTCTTAATTTTTTTAAATGTTAA 2304675 37 100.0 39 ..................................... TCACTCATTCCTAATAGCATGCATCCCATTCGTCTTCCT 2304599 37 100.0 34 ..................................... TTAAGTTGTTTATAGAATGTAATTTTACCAGTGT 2304528 37 100.0 33 ..................................... AACCATGAATCGTTACCTGTTGTTAAATAACTC 2304458 37 97.3 34 ............C........................ TCGTTCGCCTGGCTGATAACAGTCTTTCTCAGCA 2304387 37 91.9 37 ............CT.............A......... TTCACTGATAATCATCGGCATAATCAGGGTCAATGCT 2304313 37 94.6 35 ..........T.C........................ ACAGCACCGTTTTTGCCTACTGAAATTTTCATAAT 2304241 37 100.0 44 ..................................... TACCAAACTCCATCAGGAGTAATAGTATATGCTTTGCGGTCAAA 2304160 37 78.4 0 ............CT..........T....GA...TCT | ========== ====== ====== ====== ===================================== ============================================ ================== 11 37 96.6 37 GTACGAGACCATTGTCCACTACAACAAGGATTAAGAC # Left flank : ATAGGTGCTTTGGTTTTCTGGGTGCAAAGGTAAGGGTATATAGTGAAAAGATATTTCACTTGCTCATTTTTCTTGTTTTTTGTTGTTTTTGTATACTTTCAGTTATATGCAGGACTCATGCTTTTTCCTTTATTTATTGGACTTTTATACTGTTTGTTGTTTGACAGATAGGAGGGCTAGGGGCGTGAGAGAAGTTTCTGAAAAGTGAATTTTTGAGTAAGTTTCTCATGCTCTTCTTGGCGACTTGCTTATTGTTTGGCGTTTCTTTTTGTTGATTGTTGAATTTGTAGTCTATAGCGAAGAACGTACAATGGTTAATGGAGCTTAATTTTTGGGCAGAAAATGGCTAAATATTTAATAATAATTGGCTTGCATATCTCAGAAAAAGGTCGTACCTTTGCACCCGCTAAGAAATAGTTAATTTTCGGTTAAGTAAAGTCAATATTTGTTTAGTAAAGTTCTTTAACTTACTGATAATCAGTATAGTCTTATAAGATCGA # Right flank : CTGTTTGATAGTACCTATGTATTTTATTATTGATGGTGTATTTCTGTTAAATGCATTGATCAATTGTTATAAACCAAAAACGTTGGATAGAGGGAGAGGGTGCATAGACTTTCTCATTTTTACCACCAATGTTTTGCATAGCAGTTGGATATTGGCCGGAATTGGGCTGACTGAGAAGTGCCAACTGCATTAAAGAAAGGTTGCTCCCAAGTATGTACGACTAAATGTAGGATATACTTGCATAGTGGCAAATGAGCACTAACCTTGTTGCTTTCATCAGCCTTTCTACCTTTGGTTTGGGAAAGAGCTGTGTCACTTCTCAACTAAGTAGGTGTAGTGTTCATACTCTTACATCTGGCCAAAGGTTCTTTATTTTTCCACTTGGTTGTGGTTTTGAATGAATCTGGAGTGGGTTGATTTAGTGGGGATTTTTTGTTTTTGATATGCTTGCTTTTGAGCAGTCCATTCTTTAGGGTACACCAAAATGGGGCATACCCTAA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATTGTCCACTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 2314217-2313365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042464.1 Prevotella copri strain YF2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2314216 37 100.0 38 ..................................... AAGTGTCGCCATCTTCATAACGTTCAATAGTGACAGAA 2314141 37 100.0 37 ..................................... AAAATTAATAATAAAGAAAGAGGGAAATCCAAGTGGA 2314067 37 100.0 34 ..................................... TCGTATTTGCACATATAGTCCAGCTTAGTGAACT 2313996 37 100.0 36 ..................................... CCAGAGAAATAGAAAGCGTGCAAAGGCATCACCAAA 2313923 37 100.0 38 ..................................... ATTGTATCAAGAATATCTCTAAAATTAGGATTATCTAT 2313848 37 97.3 37 ........................C............ TTCATATAGCGCAAATCGTTATGGAAAACCAGCTTGA 2313774 37 94.6 36 ....T...................C............ TTTAATTAATTAAATTGTAAAACATGTTTATTATCT 2313701 37 97.3 37 ...........................A......... TGTGCTGCCTGCCCTGTCATCATGTTGGCAGGAATTG 2313627 37 97.3 38 ....T................................ AGATTATACCAATCAATGACAACATTCTTCATCACACT 2313552 37 97.3 37 ........................C............ ATCTGTGAGGCAGACATTGCTGAATGGTTTACCTGAC 2313478 37 91.9 40 ............CT..........C............ GCATTGTTACATGCAAACTTCATTTCTTCCAATGAAGTTA 2313401 37 89.2 0 ........................C.........TTT | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 97.1 37 GTACGAGACCATTGTCCACTACAATAAGGATTAAGAC # Left flank : ACTCACTCAATTTTCCCTTTTTTTGCTACTTTCTTTTGTTTTATGCCATTTTTATGAATGGATACAACTGTGTCGCTAACAACTTAACCATAGCGGCTTTGGTTTTTCTGGGTGCAAAGGTAGGAGAACATCGTGAAATGATATTTCACTGGCTCATTTTTCCTGTTTTTTGTTGTTTAGGGTGCATATAATACCTTATTATATATATGTGAGGAATAGTTTTTTGTAGTTTGATTTGTTGGTTTATGATATTGTGATGGTGTAGTTTACTTTTATGCTGAAGAGTGCTTTTTGGGTTAACTCTTTGATTTGTTGTTAACAACACTAAATTGTGAGGTCTAGAAGGCCTAAATATTTAAGAATAATTGGCTTGCATATCTCAGAAAAAAGTCGTACCTTTGCACCCGCTAAGGAATAGTTAATTTTCGGTTAAGAAAAGTTAATATTTCTTTAGTAAAGTTCTTTAACTTACTGATAATCAGTATAGTCTTATAAGGTTG # Right flank : GAACTGCCTACGTGCTAAAGACTTGTGGACAGTTCAACGTGCTTTTTTCTTAGAGATACTTTTTAAGGGGGTACTGAAATAGATTTCTTTTAAAGAAATGGCCTCATTTTCAAGTATTTTGAGGAATTATCAGTAAAATTCCTAACGAAAAGTTGGTATTCTATTATATTTTTAATACTTTTGTACCTTTGTATAAAAGTGCTTAAACTTATAATAATGAATAGATATATTTTCAATGAATGGTTAAACAGGCGAAATGTTCTGGTAATCCCTTTGCTCTGGGTTGGTGCTGCTTTGACATCTGCTCAGGTTGGGCTTAACTGCTTGTACTCTTTTCTTCTTATGGTGTTGGCTGTTTATGTGGCTAGCAAGGATGGTATTTGGCTTAAGTCAGATAATTCTGAAGTGAGGAACGTGTTTCTGGTAGCTATGTATTCTATGTTTGACAAGAAAGATTAAACTGTTTTATATGGACTTTTACTGTTAACTATGTGAGTTTC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATTGTCCACTACAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //