Array 1 11470-9510 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018315.1 Sphaerospermopsis kisseleviana NIES-73 plasmid plasmid1 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================== ================== 11469 23 100.0 49 ....................... CAATCGTCCAACTTTTCTCTATAATTTGGATTTTTGTTTCTGATTACCT 11397 23 100.0 56 ....................... GATTAGACAATTCTCTTTTCACTGCCGGCACAAGTTCCCGTGGTTTCTGATTACCT 11318 23 100.0 56 ....................... GTATGGTAGCACTTAGCTGGCAAGGGCGAAGCCTGGAACTCCGTTTCTGATTACCT 11239 23 100.0 51 ....................... TAGATTTGAAAAGTCATGGTACAATATCCTTTGAATCGTTTCTGATTACCT 11165 23 100.0 54 ....................... CAAAGAACATTGCTCTAGTTCTAACTTTACAGGTTATTACGTTTCTGATTACCT 11088 23 100.0 54 ....................... CAGTGAACCCTACACCGCAACGAGGGTTCATCAAGCCGAAGTTTCTGATTACCT 11011 23 100.0 50 ....................... ATCGCTCTTATATAAGCAATTGCGAGAGCGGTTAAAGTTTCTGATTACCT 10938 23 100.0 48 ....................... TACAGTGTTTCTTTGAATGGGATTTGGGGGATAGGTTTCTGATTACCT 10867 23 100.0 51 ....................... CTTTCTCTGCGGGGAGGTGGGAAATAGATGCAAACACGTTTCTGATTACCT 10793 23 100.0 49 ....................... AACTGGAGTTAAATTGCGATCGCAGCATCTATTCAGTTTCTGATTACCT 10721 23 100.0 50 ....................... ACCAGAGTTCAAAGTTCCCAAACCTTCTATAGTCAAGTTTCTGATTACCT 10648 23 100.0 50 ....................... TAGAGAATATTTCTTTGCAAGCCTGAGTTTTATCAGGTTTCTGATTACCT 10575 23 100.0 53 ....................... ATAAATTAGATGGTGTAGGGACTTCTGTGCATGATCAAAGTTTCTGATTACCT 10499 23 100.0 49 ....................... TATCTATACGATCGCGAATCACATAAGATGAATAAGTTTCTGATTACCT 10427 23 100.0 48 ....................... GGGTTTATAGACTTTATTCTTAACATTGACAAATGTTTCTGATTACCT 10356 23 100.0 50 ....................... ACTATTGCTTTAATTTCTTTCTCTTGTATTTGTTCTGTTTCTGATTACCT 10283 23 100.0 53 ....................... ACGAATATTCCCCCAGGAGCGTCACTAAATGCCCACTTCGTTTCTGATTACCT 10207 23 100.0 50 ....................... CTGTGATTTTGGTTCTGATTTCTTCCCAAGTTAGGTGTTTCTGATTACCT 10134 23 100.0 47 ....................... TTCAAATACTCATTGATGAGCAAACAATCAAGGGTTTCTGATTACCT 10064 23 100.0 50 ....................... ATCAAATTTTATGCCAAAACGCAAGCCAGAGACTAAGTTTCTGATTACCT 9991 23 100.0 50 ....................... CAATAGTGTGCGTTTCCTCCAAAAATCTCCATATTGGTTTCTGATTACCT 9918 23 100.0 59 ....................... GCTACCTCTGCGAGAGATGCCGTCTTTGCGACGTTCTACTCTTTGGTTTCTGATTACCT 9836 23 100.0 51 ....................... TGAAAATATGGGAATCGACAGCATTACGCTATATGATGTTTCTGATTACCT 9762 23 100.0 49 ....................... TTTCCTCTTGAACTTTAGATTTATTATCTTTCCTAGTTTCTGATTACCT 9690 23 100.0 56 ....................... CTGCATCTAACACTTCTAATTCTTTCTAAATAACAGAATTAGGTTTCTGATTACCT 9611 23 100.0 56 ....................... AGAGATGGTCAACGTAACTCCTACTAACATCCATTGGTTGAAGTTTCTGATTACCT 9532 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =========================================================== ================== 27 23 100.0 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTTAGCGGATAAACTGCATAATGCTAGGTCTTTACTAGCAGATTGGCAACAAAGGGGAGATATAATTTGGCATCACTTTAGTTGTGGTAAGGAGAAAACTTTGTGGTTTTACCAATCATTGCTGGAGGTTTATCAACAGACTGGTTCTGATGTGATGACACAAGAATTAGAACGAGTGATCAAAGAACTATTTGAGTAATAATCTGTTTGAAATTGTAAATTTCAGCTTGATAATTCTTAACCGAATTTAGCTTGACAGGTAAAGCAACCAATTTTACCCTTAAATAAGGATAAATTTGGCAAACCGAAGCGGGGGCAAAAACCCCAGGGGGTCCGCCAAATCGACAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCGGTTCACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAATTCGTCTCTAGACTCCGGTTCTAGACTATGTTTCAAAGCGCCGGGGTTTCTGATTACCT # Right flank : CTTTGACAAACCTAACATCTGGCTTGTGACGAACCTATTGATTAATTTTAAATATTATTGAGGAAACCCCATGAAACCCATTTTCAGAACCACAACATTAGCAGTTATTACAGTATTATCATTGAGTTGGCATAATCAAGGATTAGCACAACAAACACAAGGACAAAAGTTAGTAGATTCCATACAGTCTGTAGCACAAGTCAAACGTCAACTCAAAGAGCTTTTCACCAACTTAAATCAATGCGGTACAGGTGGTTGTTTTAATATGATAACTACCAATATCTGTGAATTAGTTGGAGCATTGGATGTCAAATTAGATGGTAAAATTATTGGTGAAATGTCTGGTTTTAGTGACACAAAACTCCCTATTTCAGCATCGGACTTAAAATTGATGAAAAAAATATTTAGTCAGTGCAAACCCACTAATTATCAATATTGGAAATGGGAAACTGTACTGCACGTTGGCTATGATCCCACACCCCAAATAGACAAAGAAATCC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 33493-34818 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018315.1 Sphaerospermopsis kisseleviana NIES-73 plasmid plasmid1 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 33493 23 100.0 57 ....................... AAGAACTACCTCCTCCTAAATGGCTAATTAAGAAGGCATCAGTGTTTCCACATAACT 33573 23 100.0 49 ....................... TTAAACTGCTTCCTCTTGTCGCTGCGACCTGACTCGTTTCCACATAACT 33645 23 100.0 52 ....................... AATAACCTGTTGCGCTGATATTTCAGTGGGCAACTTCAGTTTCCACATAACT 33720 23 100.0 50 ....................... TGTAGACTGCCAAACCTGCCCCATTTCTAGCACTTGGTTTCCACATAACT 33793 23 100.0 48 ....................... CTAAATTCTACACCAGAAAGACCCTCAATTTTCTGTTTCCACATAACT 33864 23 100.0 50 ....................... AAGAACCTTCTACAAAAGATTGAAATAAATTCTGCAGTTTCCACATAACT 33937 23 100.0 52 ....................... AGATTTTATACCTGAGTCTGTCAGTTGTGCAGGAGGGCGTTTCCACATAACT 34012 23 100.0 49 ....................... AATTTATCACCAACGGGTACAATTTCATTTTTAGGGTTTCCACATAACT 34084 23 100.0 48 ....................... TACACTCAGAGACTTCCATACATTGATGGACAATGTTTCCACATAACT 34155 23 100.0 49 ....................... TGCCATTAGAGACTACATAGCCCTCTTCGTCTGTGGTTTCCACATAACT 34227 23 100.0 48 ....................... TAACTTGTCCCCAAGTCTGTTGCCTTCTCACTTTGTTTCCACATAACT 34298 23 100.0 50 ....................... CACTCCGAACTTTAGCTTCTTTACGGTAAACGTAAAGTTTCCACATAACT 34371 23 100.0 51 ....................... GTAGAAGGATTTGCCGACCCCACAACCCAAGCCATTAGTTTCCACATAACT 34445 23 100.0 50 ....................... ATTCCATCATGGCTAGACTGAGCAATGGGGAATTTGGTTTCCACATAACT 34518 23 100.0 50 ....................... CTGAAAAATTAGACAGACAACGCGCAATCCAAAGTCGTTTCCACATAACT 34591 23 100.0 51 ....................... TTATCAGGTAACAGTTTGAGGTCTAAAGTGTAATTTTGTTTCCACATAACT 34665 23 100.0 53 ....................... TAGAATCACCTCATCATGTACTATTGCACTTAATCTGAGGTTTCCACATAACT 34741 23 100.0 32 ....................... AAGTGCGATCGCCAAAAAAACCAATGAAAATA Deletion [34796] 34796 23 87.0 0 .......A..........A...G | ========== ====== ====== ====== ======================= ========================================================= ================== 19 23 99.3 49 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTCATAATTTACGACTTACCAGATAGCAAAGCTGCTAACAAACGCAGGACAAGATTACATAAAATGTTGGGTGGTTACGGGAAATGGACGCAATATAGTGTATTTGAATGTTTTTTAACTGCGGTGCAGTTTGCGACACTACAAACCAAGATAGAACGATTGATTAAATCTGAAGAGGATTCGATTAGAATTTATGTACTAGATGCTGGGAGTGTGAAAAAAACTATTACTTATGGTTCGGAAACCCCTAGACAAGAGCAAGCTATAATCATATAATTGATACATGAGCTTGAATTTTTGGCAAACCGAAGCGGGGGCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTAAATACTTTCAGCTTTTTGTTAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCCGCCAAAATCACTCCTGGAATCTTCCCCCAGACTATGTTTCAGATGGCGGGGTTTCCACATAACT # Right flank : GAGAGTAGAATCAATGATAATCACAAAATATAACTCAAAATAATGCCAAGAGCAGCAGCATCTAACAGACGAAAAGCCCCAGCCAAAAACACACCTTTAGAATGGGCAGAAAATACCGAATTAATTGGTTTAGTATTTGACTTAGAACCAGCTACTTCCGCATCTTTATATTCTCAATATACCATTGCCCTCCATGCTTGGTTTTTGGATCAAGTACGCCAAATTAACCCAACACTTTCAGCATATTTACATGATGGGGAATCAGAAAAACCCTTTAATATTTCTGCCTTAGAAGGTCAATTAGTTCCTACTGGTAAACAACTACAACTACAAGCAAATAACACCTATCATTGGTATGTTAACGTTTTTTCTCAGCCAGTAGTCCAGTTTTTAAAACAATGGTTAACCCAACTGCCATCAACCATAAATTTAAGAGATGCGGAATTACAAATCAAACAAATAAATATTGTTAACCCACCAACTACTTATCAGCAAATTTT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 855485-853980 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 855484 37 97.3 35 .........T........................... GATTTAATTTGGTGCTTGATTGCTGCTATGATATT 855412 37 97.3 35 .........T........................... CTCGGTTTTGAGATTGATAAACTCATTAAATTTTT 855340 37 97.3 38 .........T........................... CTAGCTTACACGGATGACTTCAGAGCGGCGATCGCATC 855265 37 100.0 40 ..................................... ATCTTGACTGCCTAATTCTTCAAAGCCCTTGCTACACGAG 855188 37 100.0 36 ..................................... ACCCGGAAACACACCTTGAAAATAATCCAGAATTTA 855115 37 100.0 37 ..................................... CATTAGAGTGCATCGTCGCTGGTTTAAAAAAGAAACG 855041 37 100.0 36 ..................................... TCAGAATTAATCAAATCAGAAGTAGAAAAGCAAGTT 854968 37 100.0 34 ..................................... CGGAAATTTCGCTTTTATGCACGCTTAGGTACTA 854897 37 100.0 43 ..................................... AATACACCCGCTGCAAACTACTTAGGAGAAAACCAGACACAAC 854817 37 100.0 38 ..................................... AATACACCCTCCTGGTAAATCTTAGCTATACCCATTTT 854742 37 100.0 35 ..................................... CATTTTTCTGGCTTTACCTCTACCTTGCAATAAGG 854670 37 100.0 37 ..................................... GGTATTAAGTACCGTCTCGTTGACGGAGAACTTTTTT 854596 37 100.0 35 ..................................... ATATTAAAAATAATATCCACTGACGTGATTATTAT 854524 37 100.0 35 ..................................... GCTGATGCAACGTTTACCCGTGCTGATGGGGGAAT 854452 37 100.0 36 ..................................... TTCCACTAATCCCGTCTAACATGGCAATAACACGGC 854379 37 100.0 37 ..................................... CAGAAATAGTCTTCAAAAGAAGACTTTCTCAAGAAGA 854305 37 100.0 36 ..................................... AGTTTATGTCCAGAAAAAACAACCAATCTCTAAATT 854232 37 100.0 36 ..................................... ATATCAAAACTGATGATTTACAGCCAATTCTTGATA 854159 37 100.0 35 ..................................... ATAATCCAGCTTTTATATCAGGATATTCGTAAATT 854087 37 100.0 34 ..................................... ATATCAATATTTTTCAGATTTTTTGCAAACAATT 854016 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 21 37 99.6 36 GTTTCTAGAAGTTCTGAGGACTGATTGTTGTTTAAAC # Left flank : GTTTATTTGAAAAAGTGCAGCAAGCTGATGTGAATGCTGCCAGAAATCATAAACAACATGGAGGCTTTGAAGTGGGAGAGGTGAAATATAATTTAACAAAATTACAGTATCAAAAACCCAAGAGATTTAAAAAGAAAAAGTTGACAAAGTAATCTATTTCAATTATTATTAGATTACCGCAGTTTGGGCGGGTGATTAAGTGATTAATCTATGGCTTGTAAGTTTTGATCTTTGGATTTAAACCCAGAAGCAAGGGGTGTGGTGACTATCCCCGTAGACTGTCCAGAAATATGGCAGGAACAACTTAATTTTTGGCAAACCACAAGCTCGGCTAAAAATGCCGGGGATCTGCCAAAACCTCAGAACCTAGACAATTTAAGGGTTTCAGCACTTCAAGTCTCAGATTTTAAATGCTCTTTAGCGGCTGAAATGGACTTTTTGATCAGGTCCGCCAAATATGGCTCTGAAACTTAGGCTAATTAAGGATCTCAATGGGCGGG # Right flank : CATCTCTCTAAAAAACCCTCTTCTTCCTCTCTTCCTTCGTTTCTTCGTGTCTTCGTGGTTCATTAAATCCTGAAAATCCTTAAATCCTGGACATCCTGATTCAGACAAAAAAAGATCCCCGACTTCCTTTATAAACCTCACCAAAAAAGAGAGATCATAGTAAAAAATCGAGAATCTAAATCATCAAAATGGCAAATAATATATTTGTCCTGCTAACTCTCCATCAAAACAACAATCAATTAACAACAAAATATCATCTATTACCTGTCCAATTCTAGCATCTGTAGAAACCTCAATCACCCCTGGCATCATCTCACCTGCTGCAATTCTTTCATAAGCATAGCGCGTAATTGTAGCCACATCATGAGTTAAGAGAACTCGATTTTCCGTAGCTGCCCAAGCGAGAATAGTTACATCATCTTTACCTAACAAACCAACATCCTGAACTCTGATAATATCAATATTAGGATTACGTCTAATTAATCCTCTCACAATAGTAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGAAGTTCTGAGGACTGATTGTTGTTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 919960-920152 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 919960 37 100.0 35 ..................................... TTAATTTGTAACCAGAGGGGATCTGGGTATTCAAG 920032 37 100.0 47 ..................................... CATTTATTTTCTTATCCATCTCTGGCGCTTTCTCAACGCCAAGAATG 920116 37 94.6 0 ...................................AA | ========== ====== ====== ====== ===================================== =============================================== ================== 3 37 98.2 42 CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAACT # Left flank : GCGTGGTATTTGATAAACTGCGGCAAATCAAAACTATACTGGAAAATCATGATTATATTTTAGCTATTAAAGCCTATCAAGAACGTTTACCAATTCGTTGTACAGGCGATTTGTTTAAGGAAAATGACCAGTTTATTTTACAAAATCCCCACAATTTTCAAATTGATAATATTTGAATGCTTAGATAGGGTTTAGGTAGAGATATTGATGGGTTTTTGGTACTGAGGAAGAAAATTTTTAAGAAATGATAAGTAAAGGTTGAAAATCTAGGTTGAATATGTTAAATTACTGGAAATGGTAAAAATATTTCGACACCACAAGCCCGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTGGATCGTTTACAGGATCAGCGTTTCCGGTTTTACAATGCCTTACTTATTGAGAATTTTTTGGCACTTATTGAGAATCAAAAAAGTGGTGTCGAAATGGGGATCTGAAACCCTTGCTCTGTAAGGCTTCCAAAAGTGAACT # Right flank : AGTGCTAAACTACCTAGTATTACAATCGAAAAATGCTAAGATTAAGAGTAGCCTAGTTCAACCTAACTTCAACACTATGACTAATATTAATATCACTGTACCTGAAGCCCTAAAAAGTTTTATTGATGAAGAAATTGCCGCAGGTAATTATAATTCAGCGAGTGAATATTTACAACAGTTAATCATTCAAGAAGCAAGACGGAAAAATAAAGGAAATTTAGAAGATTTTGGAATAAAGTATCAAGAATTGGAAAGTGCTTTAGATGAATTAGCTGATGATTTTGCAGCGTGTGTTGGTGCAAACGCACCTATTTTATCTGATTATGCTGTTAGTCGTGAAAGTATTTATGAAGACCATTATTAAAAATAGAAAATGGAATATTTAGTAGAACCTAAATTCAACACTTTCATAAATTTTACTCCTTAATTTTAAAGACTATTACAAAAATAAAAACATCCCACTGATCTTCCTTCGCGTGAAATAACAAACTAATCACAAG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1506151-1507928 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1506151 37 100.0 34 ..................................... ATGAGTGTAGCCTATTTGTTTACTTCTGTCTACA 1506222 37 100.0 35 ..................................... TGGTAAATTTAACAGTCCACATGGAGACTATAAAA 1506294 37 100.0 36 ..................................... ATTTCCTTTCCTTCTATATTGCTACCTTCTAAATCC 1506367 37 100.0 36 ..................................... AGCAACAGAACTACTGAAAGCTAAGAAACAAGTGCT 1506440 37 100.0 36 ..................................... TGCTAACTGTTGGGTTTTAGATTTGAGCTTATTTTT 1506513 37 100.0 34 ..................................... TCTCTATCTTTGTACTGTTTGTAACGCTGCCAAG 1506584 37 100.0 34 ..................................... GCATTTGCGGGAACAATATAAATATCTCCCTCTG 1506655 37 100.0 35 ..................................... TACCCACTTATCAGGTGCTTAAGAACTCCCAGAGA 1506727 37 100.0 34 ..................................... GCCATGCTTTCTTGTAAAGCAGTCAGCAGTGTTT 1506798 37 100.0 35 ..................................... GTGCTAGGTGCTTGGGGTTGAAAGAAAGCATGATT 1506870 37 100.0 33 ..................................... TTCTAATAAAAGATGCTTGATAGCATCTCTCCT 1506940 37 100.0 34 ..................................... GTGGGATAAGGGTAGGATGTGGGTATATAGATCC 1507011 37 100.0 39 ..................................... GTGTAATTTGATCCTACAAGTTCGACCAGCCTTACCATT 1507087 37 100.0 34 ..................................... ATTAGTTGAACTAATGTCGCTGTCTCTTGTATAT 1507158 37 100.0 35 ..................................... TTAACTGCGAAGTATTTTTTGGCTGATGCTACTTC 1507230 37 100.0 37 ..................................... AGAAAGATTAGGTCAGATAATCAAAGACAGCATCGAG 1507304 37 100.0 33 ..................................... ACCAGTGGCTATGGAATGCGAACTTTTCGCGGT 1507374 37 100.0 32 ..................................... TCTGCATGAAAATCAAGATAGAAATATTAAAG 1507443 37 100.0 34 ..................................... CATTTGAACATGATGCTACTTCTGACTTAGGTAG 1507514 37 100.0 38 ..................................... CGCCATTATTGCAGATACCTGCTAATTCAACGAGATTT 1507589 37 100.0 35 ..................................... ACTACTCGTACAACTTCGCCTGTAAAGTCAATTGA 1507661 37 100.0 39 ..................................... TGGAGACAACAGACAAATGGTATTAGGGGAGAACTAATG 1507737 37 100.0 40 ..................................... CATCCATTTTTCCCTACTTCGCCACTTTGACCTATCAGAA 1507814 37 100.0 41 ..................................... TGGGGACTGGTAAGACTGCGGCTATGTTACAGATGATTGAG 1507892 37 97.3 0 ........................G............ | ========== ====== ====== ====== ===================================== ========================================= ================== 25 37 99.9 36 ATTGCAATTTACAATAATCCCTATTAGGGATTGAAAC # Left flank : ACATCCGCTGCATCTGCTTCTGCTACTTCACAAATTACCTCACCCGTAGCGGGGTTAATGGTAGCAAATTTTTTCTTGCTGACACTTTCCACCCATTCATTATTTATTAGCAGTTGGGTAGGACCTATTTTCACCTGTGGTTGTGGTCTTGTTGCTGTAACCATCAGACCCTCCTAAAATTTTAAGGCTTTTTGTTAAATGCTATTAAATTGGTTCCAGGAGTTACACAATTACGGCTAAATCTTTTATATATGTTTACATTTGCAGGTGTTTTGCGCGGATGGGTGGGTGTAAAAAATTGGTGCTGTAAAAAAATGGCTGTATCTCTTGATAGGCTTGACTTTGGGGTTATTCCGCTTTTCCACCCACCCGCGCACCTTACACAGACTGGGTTTGGGTGTTTTTTGCTCTTGACACGATTCCTGAAATGGACTATGATAGAATCACTCGCGCAATCGAACCTTGAAAACTAAATATAGATAGGCTTTCAGGATGCCGCT # Right flank : CTTGTGCGAGAGGGAAGCTCGCGACTGCGTTATCATTGCAATTTACGGTGATTGGTGATTGGTGATTGGTGACTGGGAGGATGAATAACCCAATGCCCAAAGAATATTAAGATTGTTATAGTGTAAATATATTTTTGTGATGAATACCGTACAAGTTGTTTCTGGTTTAACTGAAATTGCCCAAAAAACCCGTTTAGCTGCTAGTAGGTTGGGTGTACTTGCTACTGAGGAGAAAAATCAAGCGATTAATGCGATCGCTCTAGCTTTAGAATCTGCTCAGGATGAAATATTGGCTGCTAATGTGGCTGACTGTGAAGCAGCTATGGCGGAAGGTATTGCTAAACCTCTTTATAAACGTTTGCAGTTAGATGAACATAAATTAAGAGATGCGATCGCTGGTGTGCGTGATGTTGCTAAGTTAGATGATCCTGTTGGTAAAGTCCAAATTCACCGAGAAATTGATAGTGGTTTAATTCTTAAACGTATTACTTGCCCTTTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTACAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 2486099-2482637 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 2486098 23 100.0 48 ....................... TTCTCCCTGTAGCAGCTATCAAACCCACGGCTAAGTTTCTAATTACCT 2486027 23 100.0 52 ....................... TATGATGGGGATATCCCAATCAATAAAGGACTTAAACCGTTTCTAATTACCT 2485952 23 100.0 50 ....................... ACAAAGAAATATATTACGATCCCGACAAACCAAATAGTTTCTAATTACCT 2485879 23 100.0 48 ....................... ATCCCTAACAATGCTGACGGTAGAGATATCGAATGTTTCTAATTACCT 2485808 23 100.0 49 ....................... AAGTTCTTCCCTCATAACAGTCTGACTTTCTTAATGTTTCTAATTACCT 2485736 23 100.0 50 ....................... ATTGTAAATAGCAACCATGACTATGTTCCTTGTATAGTTTCTAATTACCT 2485663 23 100.0 52 ....................... TCATAGACAGATATTTCTGACCCACCGTAAGGATGCAGGTTTCTAATTACCT 2485588 23 100.0 49 ....................... AAAAATCACCGTCCCGAAATCATAAAACAGCTTAAGTTTCTAATTACCT 2485516 23 100.0 50 ....................... GTCGCTCCTGAGCCTGTAGCCCGGATATAAAAAATTGTTTCTAATTACCT 2485443 23 100.0 51 ....................... GAGATTTCTTTTGGTGGTCTAGTGGATGTTATGTAAAGTTTCTAATTACCT 2485369 23 100.0 49 ....................... AGTTCTTAACCCATCTGATGAGCTTACTTACTGGAGTTTCTAATTACCT 2485297 23 100.0 49 ....................... ACGACCGTTTCTATCAATCAAGCCGATACCTCCTCGTTTCTAATTACCT 2485225 23 100.0 51 ....................... ACTCTTTCACTTTTGGTGGAGCAACTGGTGGAGTAAAGTTTCTAATTACCT 2485151 23 100.0 51 ....................... CAGAGGCGTGTCCGGCGATACTGCCGTCCCAACAGTCGTTTCTAATTACCT 2485077 23 100.0 49 ....................... TTGCCAAAGAAAATAAAACTCACATAAACATTAAGGTTTCTAATTACCT 2485005 23 100.0 50 ....................... GCTCAGTATCAAGAACACCTTTGCAGTTAGAGAAAAGTTTCTAATTACCT 2484932 23 100.0 50 ....................... TAAAACAGAACTTGACGCAACCACAGAACAACTAACGTTTCTAATTACCT 2484859 23 100.0 50 ....................... AGAGATATGCCAAGAAATACCAAGAAAACCGCAACAGTTTCTAATTACCT 2484786 23 100.0 50 ....................... TAGCATACTCACGAAGTCCTATGAATTGCCAATTGTGTTTCTAATTACCT 2484713 23 100.0 50 ....................... AAGTCTGCTATAGAGATGCACATCATTGCTGATAGGGTTTCTAATTACCT 2484640 23 100.0 49 ....................... CCTCACGAGTTGGCGGTCAAACTTGCGGAAATAGAGTTTCTAATTACCT 2484568 23 100.0 56 ....................... TACTCTCCGTAGGGTTCAAAAAACCCTATATGGTCTGTTATTGTTTCTAATTACCT 2484489 23 100.0 49 ....................... GACCTCATATAATACATTACATAGAGATTTATCTAGTTTCTAATTACCT 2484417 23 100.0 54 ....................... GAACAAAGCACTATTGATGGGCGCTCACCCGAATTACAGGGTTTCTAATTACCT 2484340 23 100.0 50 ....................... TTCCCAAACAATACTTAAAACGCCATTTTTACAGTTGTTTCTAATTACCT 2484267 23 100.0 48 ....................... AGAAATTGTTTGAATATGTTTCACATATAACCAAGTTTCTAATTACCT 2484196 23 100.0 51 ....................... TAGCTGCTTTCCCAACTCATTGGACAAAGCCTCTATTGTTTCTAATTACCT 2484122 23 100.0 50 ....................... CAAGCTCACAGCATCAAATGATGTTTAGACTTCGAGGTTTCTAATTACCT 2484049 23 100.0 49 ....................... AGCAATTGCCGGATAACGCTGCTATTTTGTTTCTCGTTTCTAATTACCT 2483977 23 100.0 48 ....................... CAGCCCCTAAGTATTGACTAGGGTTGTTTTTGTTGTTTCTAATTACCT 2483906 23 100.0 51 ....................... TTGATAGCGCAACAAATAGCAGCTAACAAGTCTAATTGTTTCTAATTACCT 2483832 23 100.0 50 ....................... GCCATACAGCTACATCGTCAATAACTACTATGTTTTGTTTCTAATTACCT 2483759 23 100.0 49 ....................... ATATCTATAGTGGTAAATGTTTCTGGTGTTTCAATGTTTCTAATTACCT 2483687 23 100.0 48 ....................... ATTAAGTCCATCAGCTTATTTTTGTCTGGGCTTTGTTTCTAATTACCT 2483616 23 100.0 53 ....................... AAGGGATATTTAGCTAAAAATCCTCAAGATTTCTCTAGAGTTTCTAATTACCT 2483540 23 100.0 49 ....................... GCGACTAACGACGGCGTTAAAAGCATCATCATAAAGTTTCTAATTACCT 2483468 23 100.0 51 ....................... TTTACTCATTGTTACACCTTTAAATCTCTGAGAATTGGTTTCTAATTACCT 2483394 23 100.0 52 ....................... AAACCATTGTATTATTTGAAGGAAAAGAAATTGATACAGTTTCTAATTACCT 2483319 23 100.0 48 ....................... TTTTAAAGTTGCTACGATATTCATGAGAAGTCATGTTTCTAATTACCT 2483248 23 100.0 50 ....................... CAGCCATAAAACACTCTGAGGATATGGGATGGTCTAGTTTCTAATTACCT 2483175 23 100.0 53 ....................... ATCCTGTTATGATTTTTCATAACAAGTAGTTGACGCAAAGTTTCTAATTACCT 2483099 23 100.0 49 ....................... AAGAATAAGCCGATTAATTCCCGTCTAATCTCTGTGTTTCTAATTACCT 2483027 23 100.0 53 ....................... TAGAAGTTTACCAGGTGCTGCTGCCATGACCCCCCAAAGGTTTCTAATTACCT 2482951 23 100.0 50 ....................... AAGCAATATATATTGCAATTGCTTGATCTGGAGCAAGTTTCTAATTACCT 2482878 23 100.0 49 ....................... CTACGGATAGCTATATAGACGCTATCTGTATATAGGTTTCTAATTACCT 2482806 23 100.0 50 ....................... TCAAAAATTTCCTTATTAATAGCGTCGGCTATATCTGTTTCTAATTACCT 2482733 23 100.0 51 ....................... TATCCCCGTGGGCGTTCGGGGTAGTCTTCCTTCTCATGTTTCTAATTACCT 2482659 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================================== ================== 48 23 100.0 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : TCATAATTTACGACTTACCAGATAGCAAAGCTGCTAACAAACGCAGGACAAGATTACATAAAATGTTGGGTGGTTACGGAAAATGGACTCAATATAGTGTGTTTGAATGTTTTTTGACTGCGGTGCAGTTTGCGACACTGCAAACCAAGATAGAACGATTGATTAAATCTGAAGAGGATTCGATTAGAATTTATGTACTAGATGCTGGGAGTGTGAAAAAAACTATCACTTATGGTTCGGAAACCCCTAGACAAGAGCAAGCGATAATCATATAATTGATATATCAGCTTGAATTTTTGGCAAACCTAGAGCGGGGGCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCCAGCGTTTCATCAGTTTCAGTTGGCGGTTAACCCGAAGCCTGAAATGAGGTTTTTTCAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : ATATAAAACACAGGAGGCGATCGCACGGAAAAAATAGCTACAACTTGGGCAACAATATTAGCAAGAAGCGAAATGGGAGAATCATTACAAATCATAGCTCAAGATTTAGAAATACCATACACCACAGTTAAAACTTATGTTAAATTAGCACGACGGGCGCTGAAAGATAACCAGAGCAATATTTAACATGATTATGTATTTGGTGAAATTAGCGATCGCTTTTTCCAACATGTGAATTATATTAAATTAGCGATCGCCAAAAAAGATTAAATATTAAATATTAAATATTAAATATTAAATATTAAATTTAATCTTGTTTATTTTGAGGAGTAAATTAATAGTGAAAGCAAAAATCAGAGATACAGAAATCTATTTTGATATTGACGGTTGTGGGTTAGCAGTTGAAGAACAGGGAATACGTGAAAAACCAGTTGCTTTCATCATTCATGGTGGACCTGGAGTAGACCACACCAGTTATAAACCTTGTTTTTCTCCCCTCA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2843640-2846535 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 2843640 23 100.0 52 ....................... TTCTTCCCAAACCTGGGATTTGCCCGACTCCTCCAAATGTTTCTAATTACCT 2843715 23 100.0 54 ....................... ACGTTGGTGACGTTGGTGACACCTCCTGAAACCGTTACTGGTTTCTAATTACCT 2843792 23 100.0 48 ....................... TACTAAAGACTGTTTCATTGCTTTTATAATTTCAGTTTCTAATTACCT 2843863 23 100.0 49 ....................... AGTTGTCATTTTCTTTTTCTTCTGTCTTGATTTGAGTTTCTAATTACCT 2843935 23 100.0 55 ....................... AGGACATATCTCTTAGTAGTGGGTTTAGTGGTAATGCCGTCGTTTTTAATTACCT 2844013 23 100.0 50 ....................... CTACAAACTCTTCTGGCTCTGAGTCTTCTGTAAACTGTTTCTAATTACCT 2844086 23 100.0 50 ....................... TATTGTTGGAATTTGTACTAACATATTTTTCTTAAAGTTTCTAATTACCT 2844159 23 100.0 50 ....................... ACAGGTTTGTTCGTCACACCATCCCCTGCCCAATGCGTTTCTAATTACCT 2844232 23 100.0 48 ....................... GCGAATTTTTCGCTTAACGACTTTACTGACTATGGTTTCTAATTACCT 2844303 23 100.0 48 ....................... ATCGCACAAATCCCTATTTATATTTTTTTGAAAAGTTTCTAATTACCT 2844374 23 100.0 53 ....................... CACTAAGAACGGCTTATCTTTGTTGTCTATAGTACGCAAGTTTCTAATTACCT 2844450 23 100.0 52 ....................... ATGCTAGAAATTTTTTCGAGTTTTTCCTGTTCAGTTTCGTTTCTAATTACCT 2844525 23 100.0 50 ....................... TTTATATCACATTATACTAATACTAGCATTTAATACGTTTCTAATTACCT 2844598 23 100.0 50 ....................... TGATGTCATCGTCATCCTTAACAAACCTTACCCATTGTTTCTAATTACCT 2844671 23 100.0 49 ....................... TCGCTACTATACCAAATCCGTCCCAAATTATTAATGTTTCTAATTACCT 2844743 23 100.0 51 ....................... TGACTACCCTAACACAAACAAAACTACAGCCACCAAAGTTTCTAATTACCT 2844817 23 100.0 50 ....................... TCCCCCGAAGTGGGGGGATTAATTTTTTTTATCTAAGTTTCTAATTACCT 2844890 23 100.0 52 ....................... AAATTCTTGATGAATTGATTTAATATTCTTGAGATATTGTTTCTAATTACCT 2844965 23 100.0 50 ....................... CATTGCATTACTCCTTTTTATTTACTTTTAGTCTTTGTTTCTAATTACCT 2845038 23 100.0 57 ....................... TTGCTATCCGGTAGCTTATCCCTATATTGAGAGTGGGATACTAGTTTCTAATTACCT 2845118 23 100.0 49 ....................... ATTACTATAACTAACAAGTTAGCTTTGTGTCAACTGTTTCTAATTACCT 2845190 23 100.0 53 ....................... CCTCAAGACCTGCATTTATAGCGTCTAGAGGCGCGAGAAGTTTCTAATTACCT 2845266 23 100.0 48 ....................... CTAATATTAAATGGAATTAGGTGATATGGACTATGTTTCTAATTACCT 2845337 23 100.0 51 ....................... TCCATTCAGAAGAGTGAATTTATATTAGCTGGACTGCGTTTCTAATTACCT 2845411 23 100.0 51 ....................... ATTTTTTGCTACTAGCTTGTTGTTCGCACTGACTAAGGTTTCTAATTACCT 2845485 23 100.0 49 ....................... GATGCAGATGGTAATAACCTTGAGGACATTGAAAAGTTTCTAATTACCT 2845557 23 100.0 51 ....................... ATTTTTTGCTACTAGCTTGTTGTTCGCACTGACTAAGGTTTCTAATTACCT 2845631 23 100.0 53 ....................... CTGATTCTGCCTCTAATAAAGCTAAGGCTACGCTAAATGGTTTCTAATTACCT 2845707 23 100.0 48 ....................... ATACTTTTTCAGTCTTGACAGGGAAAACGCCTAAGTTTCTAATTACCT 2845778 23 100.0 49 ....................... AGCATTCTGTGGGATAACAAGTTAGGCTATCCGATGTTTCTAATTACCT 2845850 23 100.0 50 ....................... TGGGGACTTTGGGGACTGCTAACATTAACCGCTTGTGTTTCTAATTACCT 2845923 23 100.0 51 ....................... AGAACATGGCTTTAACATCAAAATATCGTCCGCAAAAGTTTCTAATTACCT 2845997 23 100.0 53 ....................... TTTAAAGCAAAGAATTATTTTCTCTCATCTTTTTGCCTAGTTTCTAATTACCT 2846073 23 100.0 50 ....................... ATGCCATCCCATGTCGTAGCCCTTTTGAATTACATAGTTTCTAATTACCT 2846146 23 100.0 50 ....................... TTTACACACACCCCTCATAATTAAACTATCGCATCAGTTTCTAATTACCT 2846219 23 100.0 50 ....................... AACCCACGCCCCACAAAACACACAATCCCATCTGATGTTTCTAATTACCT 2846292 23 100.0 50 ....................... CAATTATTGGGCGTTGTACACCTTTAGATAGTAGGAGTTTCTAATTACCT 2846365 23 100.0 48 ....................... ACTGTAGAGATATCTAACAGTCTGGTTAGATATGGTTTCTAATTACCT 2846436 23 100.0 54 ....................... TGGCTATAGTTTCCACTGATTGAATCCTAAAAGGTTTTAGGTTTCAAACTACCA 2846513 23 82.6 0 .C...........A..A.A.... | ========== ====== ====== ====== ======================= ========================================================= ================== 40 23 99.6 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : GCTGGATGTAGCTGTTCTGGGCATGATCTTGAGGCTACATAATGTGATTTTCTGTATTTTACTATGTTTTGGTCCCCTGGTGGGGATGGGGTGAGGAGTGGGGAGTCAGGAGTCAGGAGATCAAGGAGTCAGGAGATCAAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCGGGACTTGAATATAAAATAGAAAGAGTGCAGTAATTATTTGTAATAAAAAAACTCTTGACAAGTAGGTTGCTAAATTTTACTCTTAGATCAGGATAAATTTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : CGTTTAAATGAATCAAATTGAAACAGATATCAATACTGCTCGGTTAAGGATTTTCGTAGGTTGGGTTGAACAAAGTGAAACCTAACAAACCCTTGTCAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCGATTTTATTTTTTTGTGCTTAACCGACAAGTATTGAAACAGATATTACAAAGATAATTAAAGCCCAAAGATTAAGTTTTTCAGAACTTTTTTAAATTTAAGGCTGCATAGCTATAAAGTAATAGAAGTAAATTAATTTAACCAGTAATTTACAAGATAAAAATCGAGCAATTACAACTTGTGTGTAGTAATTTAACTGGTAATTTTTTTGGTTCTACCGTACTTGTTATGCTAAATTACCAGTCTGAAAGAGGGAACTCTTAACAGGGAACTCTTAACAGGGTAAAGAGGCAATTTTTGTAAAAATATCCAATATTTGTAACTTATGTCTTATGTATATTAAGCCTTCCGCAGTTTTTTGAGATTGATT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2926397-2925893 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================ ================== 2926396 38 100.0 44 ...................................... AACCGCTATCAATTCTTTTTCTAGATTCAATATCTTGATATAGT 2926314 38 100.0 42 ...................................... TCAGATGGTTTTAGATTTTAAATTGAGATTAGATGTTTCAAC 2926234 38 97.4 42 .....................................T TGCCCCTACGATTTGCCCACCTAGTCGGTTGATTGCATCGGC 2926154 38 100.0 39 ...................................... TTAGACAAGAGAATCAGAACATTAATGCCCTGGTTATCT 2926077 38 97.4 35 .....................................C GCTCTTTTTCTGCTTTTATCCGATCCGCCTCCTGT 2926004 38 97.4 36 .....................................T TTCTAATTGTGCGATCTTAACGTCACGTTCTTCCAT 2925930 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ============================================ ================== 7 38 98.9 40 GTTTTTCATAACCTTTTCCCCGCAAGGGGATGGAAACA # Left flank : CCTTACAGGAAAATAGCCTGTGAGTCGTCCGAATGCTGATGCTTCCAGCACGCTTCGCGAACGCCCGTACAGGAGTCAGGAGTCAGTGGTTTGACTTTGCTTTTCCCTTCTGCCTCCTGCTTTGTCATAACGACAATTTTTCACACCCACTTGGTTAACTTTTGTAAATTTGAGAACTGGGGAAAATACAGCTTTTTAACTACCAATATCCTTAATATTTCGTCGTTTGCGGGATTGTAACGGAATGTTAAGAACTTTGATAAGTTTGGCGCAAGCAGCTATAAAGATTTACATTTAGTAATGTTCTGTGATTTTAAGAAAATGTTGGTTTTTTGGGTTGACATCTGGGAGTTTTTCGGTTAAATTATCTTTATTGGCTGGAAACAGCAATCTGTACCAAGAAAATTGAATACTGACTTTGCTTGTTACATCTTTGTTTCCGTAGCTTGGCGCAAATGCCCTTTGAAAGCTAAATGTAACAAGGTTTCCGTGAGTATAGG # Right flank : TTTAATAAGCTTTTTAAATATGAAATGTGCCAAAAAAGTTTTGCACCCTCATTTTCGCAATAAACCCTAGCCATTCTCAAGATTATTGCTATAAATTCTCAACTATTTAACGAGTTTTGGTTTTTTCAGCCATTGATATTGACATACACTTTTTTTCTGGTATGATATGTGTATGATCCAAGGGAGTTATATATCTTCCAATAACCAGCAGGAATTATTTTCTAACTACACTTTTTTTAATACACTTCCTAAAGTATTCACTAACTTATTAATATGCTCTTTTTCATGGGTTGCCATAATTGTCACCCTAATACGACTTGTTGGTACTGTGGGAGGACGGATAGCAGGAGCAAAAATACCCGCTTCCTTTAGCTTCTTACCTGCTGTTAAAGCTGTAGCCGCATCAGGTAATTGAAAACAGAAGATCGGAGATTGGGAAGGTAAGATTTTTAAGTTAGGTGTTAACTTAGGTGTTAACTTAGTTAAATTTTCTGTAACCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCTTTTCCCCGCAAGGGGATGGAAACA # Alternate repeat : GTTTTTCATAACCTTTTCCCCGCAAGGGGATGGAAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 7 2961502-2961758 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2961502 37 100.0 33 ..................................... CCTTTCCAGCTACAGTTGTTTCTACATCTTCTT 2961572 37 100.0 35 ..................................... GATTGCGGCGAAATTTTTTGCGACTAGAAAATACG 2961644 37 100.0 41 ..................................... TCTCCGGCGAAATTTTTTGCCGCGATGAGGTGATCTAGTTT 2961722 37 89.2 0 ........CC.T.....T................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 97.3 37 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTAGGTAAAAACCGATAATTAATTGTCCGAATGCTTCGCCCCTACATTGTTGACGCGAAACCTAAATCAAAATGTGGTTTATTTACCTGAAAATAGCTTGATAGCTGAAAGCTGCTGTATATTGCAAATGTGTCAAAATCAAAGTAGAGATTTAATTGTTTCCGTAGCTTGGCGCAAACGCCCCTTGAAAGCTATTTGTAACAAGGTCTCCATGAGTGTAGG # Right flank : CAAAACTTGGGGATAAAAAAAGATAGAATTACTAAAAAATGCGATCGCTTAGTTGTAATAAATTAGGACTTACGCAAGATGTGACTGAAAACCTTATTCTTGCGTAGGGGTAATTCATGAATTACCCCTACTTTCGTTCCCTGTTGCGTAAGTCCTGCGTAATTTAATCAGCTTTTGCAGTGCCAATACAAAAAATTGAACTTGCCAAAATAGACAATAAACAATAGACATCTCCAGAAAAGAAATTCTGGAACTTATTTATGGGGGCAGGGCGAAGCTTATGGGATATCTAGATGTCTGATTTTTTCGATAAATTATCGCCCTGTAAGGGCGAAGCATTTGGAAAATATCCTTTGGTGAATACCGATCATTAATCGCTCGAATGCTTCGCCCCTACTTCGCCCCCACAACTTATGACAAATTAATACATTCTATTGTGGAGATGTCTAATAAACAATGTACAATTGGAAATTATACTTACTGCAATTGGTTTTTTTGTC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 8 3013664-3014308 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 3013664 36 100.0 36 .................................... CAGAACGACGAGAAAAAGCGTGAACGGGAGTTTTGG 3013736 36 100.0 42 .................................... CATGGTTTTGCCTCCTTATAGGCATAAAGTCCTATAAAGAAA 3013814 36 100.0 45 .................................... TTGCGCTGGAATAATATCGTACCTGGACACACAAGAGGAAAAACG 3013895 36 100.0 38 .................................... CATGACCGGCGTTACAGAGTACATGAAGTGCCTGGCAG 3013969 36 100.0 43 .................................... GAGGATTGCTCTGCCACATATCCCTGCTGGGGAGATTCATATT 3014048 36 100.0 39 .................................... TACAAGCTGGTCGCGTGCTACTGCGACCAGGAAGAGTGC 3014123 36 100.0 42 .................................... CCAGGTGTTTTTCAGTGTCAACTTCAACTTCAAGGGCACTGT 3014201 36 100.0 36 .................................... TGGGATTGTTATGAAGACAATCCCGGAGAATTTCAG 3014273 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 9 36 100.0 40 GTTTCCATTAATTCCACTTCTTGTTAAGGAAGCGGT # Left flank : TTTTAGCACGGGAAATAGCTAAACCATTATCAATAGGCGCAATTAAACTAGCAATAGAACCAATAGCAAAACCTCTTTCCATTGCTTCTTCTTCTGTAGAGGAAGATAATCCAATTATTGCACCTGTTACACCAAGACTCAAACCCAGCCACAACAGTGCTTTCCAACGTCGTGTGTAACAATATCCAGCAAGGGGAATCAATAAAGATAATAAAACTGCAATGGTTATATTTAAACGAGAAAGCCGCACAATTTTATCTGCTTTTTTCCGTTCTTCTTGTTCATTAATTGCATCTAAAGATTGACGCAACAGTTTTTTATTGTCATTATTTTCTCCCATAACAGATATTCCTTCACCCTGGCGGTAGTTTTGTTTACATCTCCTGTAACAACATACTCGCAATTTTCTCGTGATTCAATGCTTCTCATGCGAATGAGGAAAATCTTCATTTAAGCAGTAGATCCCGGACTTCTTTGAGAAGTCCGGGATCTGATAGTGG # Right flank : TAGCCACCATTATAAACCCTTACCCTGCCTACTGTCTAGAGGCAATTTTCGGCCGGGTCTAAAAAAAAGTCAACCAGCACCATAAACCATGATGTTAAAACACCTGAAACCCTTACCCAGCAAGGGATCGGCAGGGTCAACGAAAGAATCAACATTTGCACCCCCTCCCCTACCCGGCCGCAAAAAAACCATTACTAACAAAGAAAATTCCTTATTCGCATGAAACCCCCTTACATTACCTGGCAATTAGGTCTATTTTAAAAAAGTCATCAACTCACAAAAAATATGTACATTTCTCATCGTGCGGCTTTAGTCAGAAATTTAGGAGTCGCTATATTTAATGGGTCAATTACACTCATAATCCTATTAATTGCCCCATTAGGATTAGCAGCAGTTATTGTCAATACATTATTAGTTACCTTAGCTAGTTTTATAAATGCTACAGCATCTGATAAAATTGTGGTTTTTTTACAACCAACTCACATCAAAAATATGATAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCTTGTTAAGGAAGCGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 9 3663585-3664196 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3663585 37 100.0 34 ..................................... AACAGCCATATTAGCAAGAGGAGGTGGAAGTGCG 3663656 37 100.0 35 ..................................... GTCAAATATTGAGTGATCTGTGGCATAAAAGTCTT 3663728 37 100.0 38 ..................................... ACGGCTGCTGTTGCGAACAGCACTGAACCCCACAACAG 3663803 37 100.0 35 ..................................... CAAAGTGGAGTAAAAACAGATATAAAAGTTCTGGA 3663875 37 100.0 36 ..................................... AAATATCAGCCCTATTTACCATGAACTATCAGCAAT 3663948 37 100.0 31 ..................................... ATTTTTAAGCACTATTTCGTACATCTCCTTA 3664016 37 100.0 34 ..................................... GCAACATCAACTAAAGCCTGAAGGCTGAAGTCAT 3664087 37 100.0 36 ..................................... CCCCTTATTTTCTGACTCCAGAACAGCAAAAAGTAG 3664160 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 100.0 35 GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Left flank : CTGGTTGTGTGAATGAACGAGATTTAGACTTATTTTGGCAAGCTTTGATTAATGCTTGGGAGTTTGATCGTTCTTCAGCACGAGGTTTTATGGCTTGTCGTGGTTTGTATGTTTTTACTCATGCCAGTAAATATGGTAATGCTCCCGTTCATGAGTTATTTGATAAACTGCAAATTAAGTCTAATGTTGATGTACCCCGCAGTTTTGCTGATTATCAGGTTGACTTGGATGAGGTGTTACCTGATGGTGTGACTTTGACAAAGTTGGTTTGAAAATGCGCGGATGGGTGGGTGTTAAGTCGGAGTGATTATGACTAAGCTGGAAACTCTTGCACTGTCTAGTTTTTATCCGTTGGGTGTTGTCAACCACCCGCGCACCTTACGCTGTAAGGGTTTCGGCGTTTTTCGCTCTTGTGCTGTTCTCTGGAATGGGGTATTATTTTGGCATCCGCGCAAATCGTTGTGGAAATGTCCTATTTCTAAGGGTTTGCGCGATCGGCA # Right flank : CATTAAGGATTGAAACTAAACTAAAAGATAATGATTTTCACAATAAGAAACTACACAGTAATTGCAGATTGACATGACAAAAACCCATACCACTCATCTAAACCCACACCAGTAGTAGCAGAAACCTGAAAAATTTGTATTTTTGGGTTTACCTGTTTTGCATATTCAATACATTTTTCTACATCAAACTGCAAATAGGGTAACAAATCAATTTTTGTAATAATCATAATGTCACTAGCGCGGAAAATATGAGGGTATTTAATTGGTTTATCCTCCCCTTCCGTCACCGACAAAATGACAACCTTAGCCTGTTCACCTAAATCAAATAAAGCCGGACAAACTAAATTACCCACATTTTCAATCATCACCACAGAATTTAATGGGGGGTTAAGTTCCTGTAAACCCTTTTCTATCATCGAAGCATCTAAATGACAACCTGTTCCGGTGTTAATTTGCACCACTTTACAGCCTGTAGATTTAATTCTTTCTGCATCATTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 10 4753325-4755164 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018314.1 Sphaerospermopsis kisseleviana NIES-73 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================== ================== 4753325 37 100.0 36 ..................................... AGTGTAGGTATTCTAGGCTTGGGAGGTGCAGGTCTA 4753398 37 100.0 35 ..................................... TCCAGTGGTATTCATAGAGCTTACGCTCCTTATTA 4753470 37 100.0 35 ..................................... GGTCAGGGTTAGCAACAACAGTCCAACCTTTTGGG 4753542 37 100.0 35 ..................................... CTCGAATCCTTCTTTTTGCTTACCATAAGCTGGTT 4753614 37 100.0 34 ..................................... AAGAGTCAGATAAGTATCTGTTAGAGTAGTATTA 4753685 37 100.0 34 ..................................... ATTACCTCTTGGTACAAATATATAATCAGACATT 4753756 37 100.0 35 ..................................... AGTTTACCCAAGCTATCTCTTCTGGAAAGTATACC 4753828 37 100.0 34 ..................................... TTACCTTCCTTGGGTATGGGCAATCTGCAAAGTT 4753899 37 100.0 34 ..................................... TCAGCGTATTTGGCTCTAATTTCTGATTCTTCTT 4753970 37 100.0 34 ..................................... TTTAAACTATTCAAAAAAAAGACCACCTATGAGT 4754041 37 100.0 33 ..................................... CTAATATCGTAAGCACTTGCTTTAGCTCCAAAA 4754111 37 100.0 38 ..................................... TGCCAGCGCAAGATAGCTAATACTATCCTGCCAGAAGT 4754186 37 100.0 35 ..................................... GTTACCAGCTCCTGGACAGTATACTTGCTCAACAA 4754258 37 100.0 36 ..................................... TTCAAAGCCCTGACCAAGCTTTTGGTCTTTTAATTC 4754331 37 100.0 35 ..................................... GGCCCACAAAATCCCGGCACAGAGCATTGTAGTTG 4754403 37 100.0 35 ..................................... GTCCTTGGGATGGTGTTCAAGGTACTCCCTCTGAG 4754475 37 100.0 35 ..................................... TGCATCTAGCTGAGTTCTTAAGAACTCCAACTGCT 4754547 37 100.0 37 ..................................... AGCAAAAAACCATAGCCTCTCGACTTCTGTCATAGCT 4754621 37 100.0 34 ..................................... CTTGAGGAACAACTACCTCACCATCCTTTGACCA 4754692 37 100.0 39 ..................................... TGCACGACTTTGAAACTAGGTGATTTAACTTTCCATGTA 4754768 37 100.0 40 ..................................... TTCCCGCTTCCCTGGTTGCCAATTAACCAGAGCGGTTTTA 4754845 37 100.0 43 ..................................... CCTAATACACCGCAGAAAAAGCTATATTTAGCGGTAAAGTAGT 4754925 37 100.0 35 ..................................... TTTACAGAACAACCAGAAACAGAAGTACCTGTTAC 4754997 37 97.3 94 ....................................A ATTATTTTAACAGTGGTGGTTGTGGTGGCGGTTGCAGTTAAAATTACTCATAATCCTGTAAATCCTAAAATCCTGGACATCCTGATTCAGACAA 4755128 37 83.8 0 G...A........A..A.......G...A........ | ========== ====== ====== ====== ===================================== ============================================================================================== ================== 25 37 99.2 38 ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAGCGGCGGACTAAAATTCACAATATCCTCAAGTCTTATGGCCAATGGGTACAGTATAGTATTTTTGAATGTGAATTGACTGATACTCAGTATGCCAAACTGCGATCGCGTCTCCATAAGCTGATCAAGGCTGATACTGACAGCATCCGTTTCTATTTCCTTTGTGCTTGCTGTCACGGTAAGATAGAAAGAATCGGTGGTGAGCAACCCCGCGATCACACTGTTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAAATTTTAGGTGAACAAAAAATGGCTGAAATTATCTCTATACAAGGCTTTCATGATTTTTATCCAACTCACCCACCCGCGCACTTTACACAGCAAGAGTTTCAGCCATTTTACCCCTTGACACAATTTCTGAAATCGACTATTATTATATCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCCGCCCGCT # Right flank : CCTAAAAATCTCTATTTTTGTTTTCAGAAAACACTCTTAAATACTGTCACCTGTCACCTGTCACCTGTCACCTGTCACCTGTCACCTCAAAAATCCCATTTCCTGTAAACCCTGACGCAACCTTTTAGCCTCTTGCGGATTATCTTTTTCATGGAGAGCGATCGCATATTCAAAAGCTGCCAAACTATTCTTCACATCACCCACTTTCAACAACACCACCCCTAAATTTTGATAAGCTTCCGCATAATCAGGATTTAAAAAAACCGCATGATTATAAGCATCAATCGCCTCAACAAACAAACCCATTGCTTTAAACACCATCCCCAAATTATAATACCCAATCACAAAACGATCATCAATTTTCAAAGCAGTTTCATAAGCATTTTTCGCCCCTGGAAAATCTCCTGTAGCTTTCAACAAATTACCCAAATTATTATATCCTCCCAATTTCAACAAAGGATAAATAGGTAATTTAACCGCCGCTTGATAATAAGAAATCG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //