Array 1 277557-278453 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069444.1 [Clostridium] scindens strain FDAARGOS_1227 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 277557 32 100.0 35 ................................ TAGGAAGGAGGGATAGCATGCAGAACGGACAGTAT 277624 32 100.0 33 ................................ ATGTATGGTCCTCTAACTCCGTCTACCAATAAC 277689 32 100.0 36 ................................ ATATTCGTTCATTAGTTTCCCTTTCTACTAACCGTA 277757 32 100.0 35 ................................ GATGTATATAGTGTTAAGATACTTTAACAGACTAC 277824 32 100.0 34 ................................ ATTCTGTGTCATGAGCAGGATATCTGAAATCTCG 277890 32 100.0 34 ................................ ACAGAAAAGTCCACAACCTTCCCTTTCTCTGCTA 277956 32 100.0 35 ................................ GATTCATAAAACGCCACATATTAGAAAATGTGTGG 278023 32 100.0 34 ................................ AATTAAAGGTGGTGGTTAACTTGAAGGAAAGAAA 278089 32 100.0 34 ................................ ATCAAATTTATATCGTTCCGTTCCAAATCCGCAT 278155 32 100.0 35 ................................ TCTTTTGGGTACTCGATTCCGAGTATCTCCATCAA 278222 32 100.0 36 ................................ TCTATCTGCTTATTGTGCTGTGTAAGAACTATTATC 278290 32 100.0 34 ................................ AAATCACCTGTATAATTAATTACGCGCCCATTTT 278356 32 100.0 34 ................................ TCTTCTGGTTTCTCGCACCTCTCAAATTCGATAA 278422 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 100.0 35 GTCTCCACCTGTGTGGTGGAGTGGATTGAAAG # Left flank : ATTATGCGAAATATAACCAGGCGGATATCAGATATTGTAGATAGGTATGGCGGATATATAGATAGAGAAAAGGCAGAAACCATATGCGATATGGCCAGGGAAATCAAACAAAAGAATGCAGAGATATATGTATGCCATCTAGAGCGATATTCCAGTAGAAAAGGCGAAAAAATGGACATGAGCGGTGTGATGGGATCATTAGCATATCAAGGAGAACTCACAGCGTTTACACCTTGGCTAAATGCGGCCAGTGTACTTCATATAGGCAGAAATGTGACATTTGGGTATGGACAGGTTAACGTCGTCTTTGCCTAGCAATTGAAATTTGGTGCGAATGTCAAGCAAACATAAAATTCCAGGGGGATTCGCACCAAAAAAAGATACAAAATGGAATGGTAATGCTAAGAATATGTAATAAAAACTGGTGATAAATATATGAAATAATAGTTAATTTGTTGGAAATTAACAAAAAGTCCTGTATAATATTATATGATATTGCA # Right flank : GAGGGATGACAATGCTAGTCTGAGAAAGAGACACATGAATCTGCTGGCAGATGGGCTCGGTATGATCCACCATTCTTTGAAACATAAGTTCAATGTAAGCATCGAAATCATGTTTAAAACGTGATAACAGGGAAGTATCGGGGACTTTAGAGAAACCTGAAAGCCGAATAGAACTCGGGTGGAATAAATTCATGGAGATCAAAGTGTTCTGAAAAAAGAACAAAGAAAGAGGGTAATTGTCAATGAGTTTGCTTTGAAAGTCTGAAAAAATATCATTTAAAGCGATCTGTTGATATTTAGCAGTCATAAATTTTCTCCTCCTCAGGAGTTGAAATGTATTGGTGTCGTTACCTATATCTTACCACCCGTGGAGAGAAAATTTATATAAATCAAGTAAGAAACCCCAGTAAAATCAAGGAGAACAGCATTTATCAAATGCCTAAAGTACACAGAATAAGAGGAGAAATGAGCAAATGAGAAAAGAAGCAAGTTTAGCAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACCTGTGTGGTGGAGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 2 769984-772637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069444.1 [Clostridium] scindens strain FDAARGOS_1227 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 769984 33 100.0 34 ................................. GAAAAAAATTATTATGTGGTTCCAGAGCCTGGAG 770051 33 100.0 34 ................................. GTGGCGGAGTATGTGAAGAAGTTTGGAAGCCTGG 770118 33 100.0 35 ................................. ATAGCCAAATCCGCCATTGGTTCCAATCGTTCTTT 770186 33 100.0 33 ................................. ATATTTTCGGTTGCTGAATTGCCGGATTAAATC 770252 33 100.0 34 ................................. GGCCATGCCCCAATCAGGCAGCCTTCGATGAACT 770319 33 100.0 33 ................................. ATCACTCGTCTGTGCGTCAAAACTCTCATCCGC 770385 33 100.0 34 ................................. CTTTCTGCCGCTTCTTGATCGGCAATGTCTGTAG 770452 33 100.0 33 ................................. GCCGTCGGGTCCTCCTGCCTGGCCAGGCGCCGG 770518 33 100.0 35 ................................. AATAAAAACTGTTGACATTATAACACAAATGTAAT 770586 33 100.0 33 ................................. TTATCCACGAAGGCTCTTGAAACCTGGAATTCT 770652 33 100.0 35 ................................. AATTCTTTCGCCAACTGTCATTGTCACAACTCCTT 770720 33 100.0 35 ................................. ATATATGCTACGGCAATCTCTTATAAGCGGATATG 770788 33 100.0 34 ................................. AACTTAGACAGCAAGTCCGAAGCCAAAAACAATT 770855 33 100.0 34 ................................. GTCATTATAATAATAACACAGCAAAAACGAACAA 770922 33 100.0 36 ................................. TCATTTTCTGTACGGCACTCCTGAATTGCTTTCTCC 770991 33 93.9 33 ....T......C..................... AATTCTTTCATGTCATCCCCCTATTCTACTTCC 771057 33 93.9 34 ....T......C..................... TTCCATATATTGTCATAGAGAAGTTGCAGTCAGA 771124 33 93.9 35 ....T......C..................... TTTGTTGGGTCATTTCCAAGAAACCACTCTACGAG 771192 33 100.0 35 ................................. ACCTTCCTTCCTCTTGGCCTGTATTGCATCCTCTT 771260 33 100.0 34 ................................. GCTTCCTTATACCAGGAGTTCATTTTCTGAATCC 771327 33 100.0 35 ................................. ATAGCCGCGCCACCGGCTACTGTTATCGCTGTTGC 771395 33 100.0 34 ................................. TGTGCCACGGCCAGCATGATGTTGATCTTCAACT 771462 33 100.0 33 ................................. CTTCCAAGGAAGCCTCCCCTGCTCTTCCAACAG 771528 33 100.0 34 ................................. ACCTTATAAGGTTTGCTATCGCTTTGCTTAGGCT 771595 33 100.0 34 ................................. GTTCTCTGCGATCAGTTCCCTTATTCTTTCTTCT 771662 33 100.0 35 ................................. AACGCTTAATATATAGCCCTCAAACTGGCTATATC 771730 33 100.0 34 ................................. AATGCGATCTATTCAGTAGTCTCATCCATTATGG 771797 33 100.0 33 ................................. CAAAAAGAAGGAACAGAAAGAAGGAACAGCAAA 771863 33 100.0 34 ................................. GTTCTACAATCGAAGATAAATAACTCATAATTGC 771930 33 100.0 33 ................................. ATCCTCTGTCTGTTCATATGCAGCTTCATATTC 771996 33 100.0 35 ................................. GTCATTGTAATAATAACATAAGTAAAACGGTCGGA 772064 33 100.0 36 ................................. ATAGGCAAACAGCAGGATGTCAAAATCCGGATCCAA 772133 33 100.0 35 ................................. GCATCAATGAAAGCGGCATTCAGGAATGTGCTTGG 772201 33 100.0 35 ................................. ACGTACATGTTATCTATTAATCCTTTAGAACAACC 772269 33 100.0 34 ................................. TATAAACATTGGCGCTCTTTAATCCTCCGTCTCC 772336 33 100.0 35 ................................. ATAATATCCGCTTTCCTTGTGGCTGAAATGCTATA 772404 33 100.0 35 ................................. CACCATTCCGGTAGTTATCGGAGATATTACAATCA 772472 33 100.0 34 ................................. GAAAAGAAGGAGGTGGAGAAGGATGCCAAGAGTA 772539 33 100.0 33 ................................. ATCATTTTGACCTCCTAAATGCCAGTTACCATA 772605 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 40 33 99.5 34 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : CCGCCATTCTTATGGAAGTAGGTGATAGAATGCTGGTGTTAATAACTTATGATGTGAATACAGAGACAGAGGCAGGAAAGAGACGTCTAAGGAAAGTAGCAAAGCAATGCGTTAATTATGGACAGCGGGTTCAAAATTCCGTGTTCGAGTGCAATCTGGACGCCGCAAAACTTCGCCAGGTAAAGGCTATCTTGGAAGACATAATTGATAAAGAGGTTGATAGTTTAAGATTTTATAATCTAGGTAATAAGTATAAAGACAAGATTGAACATATAGGAGCAAAGAAAAGTTTTGATGTGACTGCCCCTCTTATATTCTAGAGTGGTTTAGTGCGAATGTGAAGTGCACATGAAAATGCAGGGAGATTCGCACCTGGATATTGATGATATGAGGGCTAGGGAAGTTATAATTTGTTGTGTAGGTGTTGGAAAAAGTTCTTTTGTTTGGCGTTTTGCATAAGAGATTGGCTGTATATTAGGAGTTTTATGTGCAAAATTGCT # Right flank : TAAAGAGTAGAGAGGGGCGTTTTGGTATGAAAATAGAAATAGGCAAAGAATTTCCACAGTATTTTAAGCCCTCATATCCAGAGGAATTTAAATTATTTTCACACTTTGAAACGACAGCAGGAATACCAACTGTTTTGTTTGCAATCACGACTTGGAAAGAGAATGGTAAGCCGAATGTGTGCTTTCATTCGTGGAGCTGCTTTCACGGAGATAAAACCGCTTTCTTTGCCGTGCTGGGGAACTTATATCAGCATACCCACACCTATGCCAATATCCAAAGAGAAAAATGCTTTTGTATAAACTTCCTTCCTATAAGTTTCTACGACAAGCTGGTAAACACCATTCGCCAAAATGAAATGGACGATGACGAATTTGCGGCAGGAGGGTTTACAGCTTCTTATGCCAAAACAATTCACGCCCCTGTAATCAATGAGGCGTTTCTTAGTATGGAATGTACCCTGAAAGAAGTACAGGATTTAAGCGGTGCGGGAATTACAGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 2616641-2616004 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069444.1 [Clostridium] scindens strain FDAARGOS_1227 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2616640 33 100.0 34 ................................. ATGACAATGGCATAGAAGGAACAACGGTCTTCTC 2616573 33 100.0 35 ................................. GTTCTCTCCCGATCTGACACAAAGAGCCTTGCCTG 2616505 33 100.0 33 ................................. TCTAACATATTAGGTTATTTTAATAATAGATGG 2616439 33 100.0 35 ................................. AAAATGGAAACGTTGAAAAACTTCATTGCAGAATT 2616371 33 100.0 34 ................................. CTGACGCGCAGAATTGGAACCCTGTATATGAGCC 2616304 33 100.0 35 ................................. AGTATCCTACAGCAGACGCGCCGTATTCTGCTTGC 2616236 33 100.0 33 ................................. TCTATCTTGAAAGGAGGTTTTCAGGTGGCAATC 2616170 33 100.0 35 ................................. CTCTAAATCCCCGTTTTGTTAATGAATCCATCATC 2616102 33 100.0 33 ................................. TTTAAGCCGGTATATTGGACAGTATCAATAACC 2616036 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 100.0 34 GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Left flank : CAAGTTAGGTCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATCACAAGTTATTTTGACGCAGGGGCAGTATGCCTCTGCGTCTTTTGAATATTGTTAGAAAGATTTTCTTACTATAGCCAACAAGAATTAAGGGTGGTGGAATAGTATGTCTAAAGGAGTTCGAGACGGCAGTCCTTCTTATCATTAAAACTTTATGAAAAAGCTAATTGAGAAATTAGAAATATAAAAAAAGAATAAATTTCCTTGAAAATTAGATATCGATTCAGTAGTGCGAATGTGAAGCGTACATAAAAATCCCAGGATATTCGCACCAAAAAAGTTGCACAAAAATAGTGTATTGTATTACAATATAGATTAGATGAGAGAATGTATCTAAAGGTAACTGTAATATAGCACAAAAATTTTGCAGTTATATATTAAAAATTGGATAAGTTTGCT # Right flank : ATTCCACGGCTGTGAGCAGCCATACTGCCAATGCGTTGTTCCCATGCGGGAACTTGGATTGAAATTAAAGCATAGCCAGTAATGTTGCAAAGTCAAATGCGTCGTTCCCCACATGGGAACGCAGGTTGGATTATTACCATAGTAGATATAGGCGCTCCTGTACAAGGTTGATCCACTTGGGAGAATTCGAATATCGATACCTCTTAATGGGCATAATGGCTTGACTACATCGTCCTTTAGAGTATGAAAGACATATTTTGAATCGAAAATCAGCCTTTTACCGCAAAAAAAGCAAGGCCTATTTTTTAAAACAAACCATACTACGAAGTTATTAAGAATTAATCAATATGTTTATGCTATATTTATACAATTAAAGGGAAATAAAATGGATTTTAAGCAGAAATGCGTAAAGATTTATAAGTTTTTATTATATAAAGCAAATGCCTATAGTTCAGGGCGGCGGAGATTTTTCTCCGCCGCCCTGATTACAATACCAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //