Array 1 1112760-1111734 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LS483397.1 Streptococcus uberis strain NCTC3858 chromosome 1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   1112759	    36	 100.0	    30	....................................	CGTCACCATCTTCTTCTTTTTTCTTACCGC 	
   1112693	    36	 100.0	    30	....................................	CGCTTGTAAGGATAGCTAGGTAACCATACA 	
   1112627	    36	 100.0	    30	....................................	TCAATCAACAAGCGGTCATCTCACAATTTG 	
   1112561	    36	 100.0	    30	....................................	TTATCGAGCGAGACGCACCAACCCCAGAGG 	
   1112495	    36	 100.0	    31	....................................	CGATAGAGATTGGACGCTTTCTGGTGCTGGA	
   1112428	    36	 100.0	    29	....................................	TAATAAGAATGCTGTTCAAGTCGGAGATA  	
   1112363	    36	 100.0	    29	....................................	TAATAAGAATGCTGTTCAAGTCGGAGATA  	
   1112298	    36	 100.0	    30	....................................	CAACTGAATCAGATAGTAATAAGTTGTTGC 	
   1112232	    36	 100.0	    31	....................................	CCTAGTTTTCTACCAGTACCAACACGATCTG	
   1112165	    36	 100.0	    30	....................................	ATCAGAGAGATGCTATTTGACAAAGAGGTC 	
   1112099	    36	 100.0	    30	....................................	ATATACCTGTGTCTGTTACAGCTACACCAA 	
   1112033	    36	 100.0	    30	....................................	ATTGAAATTAATTTTTTAGTTTGAGTAGCC 	
   1111967	    36	 100.0	    30	....................................	GCAGAGGTCGTAAACCTCGTCAGAAGTTAA 	
   1111901	    36	 100.0	    30	....................................	TTGGTGGTGTAACTTCTTCAATTTCAGTTC 	
   1111835	    36	 100.0	    30	....................................	AAGGACACGTGATTAAAGAGGAAGTGAAGG 	
   1111769	    36	  94.4	     0	..................................TT	|                              	
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.7	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC	                               	       

# Left flank :   TAAGAATTTGGATGATTATCTAAGTCATAACCACTTTATTGATATATGTCAGTTTTTAAACGATCTGTGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCAACTAATGATTATCCAAACGAAGATCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACACGCTTTATCATTTTAATGATGAAGTAACTTTTGAAATTCCACATGTGAATTCTATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGTCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTGATTTGAG
# Right flank :  ATTGTTCTTAAGTAGATTTGGCAACTGTTTATTTTTAAATAATTCCATATAACCTTAAAACAGCCACTTTCTAGAGTGCCTGTTTTTTTGCTATTTTCTCATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATAAACAAGGCGTGAAAATGTATATATTGAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGCCTTTTATAGTAATTAAATTTTTTAGCCAATTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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