Array 1 332-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQK01000523.1 Leptospira santarosai serovar Arenal str. 7 contig_523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 331 29 96.6 40 .............T............... CTTGAGGAACATTAGTTTCCGCAACAAAATGGATTGAGTA 262 29 100.0 33 ............................. CGGCACCTACTTCCGCCTGTACCTTTTTAATCT 200 29 100.0 33 ............................. GGAATATCCCTTCATGAATGGACAAGGCATTTT 138 29 100.0 32 ............................. AACTTAATCCTGTTACCAATAAAGATCTTAAT 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 5 29 99.3 35 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GAAGA # Right flank : GACAATGTGAAAACCATTAGAGATTTTATGTCCCTTTTCCCCACATGCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 49-807 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQK01000355.1 Leptospira santarosai serovar Arenal str. 7 contig_355, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. GAATGAATCAATTGCTGATGACCAAAGTGAAA 110 29 100.0 32 ............................. GCTAATTTCTCCCGATAATCCGCCACGTCGTT 171 29 100.0 32 ............................. GACACGGTTCAGCGCTGCAGGAAACGACTAAT 232 29 100.0 32 ............................. GTCGGAATCGGCGGGGAGGTTCTGACAAATAA 293 29 100.0 32 ............................. ACCACGTGACGATCGGATCGGAGGTGGTGATC 354 29 100.0 32 ............................. GTCATATGATTTCGTATCCAGCGATTCTTACA 415 29 100.0 32 ............................. AGATCTCACGAACAGAAACGGATTCTCGCAAT 476 29 100.0 32 ............................. AGTTCGACGAATCGAAAGGTCAAAAACCGGTT 537 29 100.0 32 ............................. TTTTCGAGATGTCAGTTTCCAATCCTCTTGAA 598 29 100.0 32 ............................. TGTGTTCGAATTTCTATTCCTAAACGTCCGAG 659 29 96.6 31 ............C................ CCCATGCGTCGGGAAATAAAACTCTGCGAAT 719 29 100.0 31 ............................. CGGCTATCGCACTCGGAAAACTTTATCAGGA 779 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GCGTGGGGTTGAACCGTGTATTCCAATCGGAAGACGTAGGATTGTTCCC # Right flank : GGCTGCGCACATCCGAATGAACCGCTTCCCACCATACGGCGCCCTAAAAAAGATATAAAATGAAGAACGTGAGTTCGGCCTAAGAAAATCGGAGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGATTTCTTTTAAGGTTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTACTATTATTATAACATGGACAACTCATCGGTGAAAAAGACGACCATTCGGGCAATAGGCAACTCCGCCGGGGCTACCATTCCTAAAGCTCTATTAGAAAAGTATAATTTTTATGAAGGCGACACCGTATTACTCTTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGACTTTGAAAAAGCTATGGATATTTACCAAAAAGGTTCTAAAAAATATCGGAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 32064-31358 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQK01000194.1 Leptospira santarosai serovar Arenal str. 7 contig_194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32063 29 100.0 32 ............................. TCCCGTAAAAGATCCGGGACCGAGCGCGCTTA 32002 29 100.0 32 ............................. TCGCCCCTTCTGGATTCTGAACTGCTGTAGAA 31941 29 100.0 32 ............................. TTATTCGCGCACGAAGATTGTTAAACGACGAC 31880 29 100.0 32 ............................. TCAACCGACGAAGACTATCTCTATTTTAAAAA 31819 29 100.0 32 ............................. GGAAAACGGCGGCAGACTTTAACCCGATTACA 31758 29 100.0 32 ............................. CCCAACGTTGGCAAATTTTTTCTTATTTTGAA 31697 29 100.0 32 ............................. GCCGGTCTTTTCATCGATCCACCAATCTAAAA 31636 29 100.0 33 ............................. GAAGGGGGAGAATAATGATTACTCTTATTAGAC 31574 29 100.0 32 ............................. TTACGCTCCACGATTGAAAAAAACATTCGAGC 31513 29 100.0 32 ............................. AGTTTATCCGCATCACCCTGAGATACAAAACC 31452 29 100.0 32 ............................. ATCAAAACCGCGACCCAGGCCAAGCGGGGCGG 31391 29 93.1 0 .......................C....A | TT,TAC [31361,31367] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GAAGTTTGTGTATGGAGGTGGCAGCTCTGATTCTGTGGGAGTTACGACATTCGGGAAACTGTGATTTTCTTACGCCGAACTCACGTTAAATACAATGTCTTTTGAATACGAAGTTTAAATTCAACTAACACGAGTCCGGCGTTTTCTCATGCGTTTTTTTCCATAAAACAAAATGTGGGAACTCCCACAAGAATTGAAAAGTCCGCTCGAATACTCTCGTCTAGATTCGGCACATAGGCAAACGTTGTAGACCGGGAATATGATATCACTGTAAAACACAGGGTTTGATGAGAATCATTTGTTATCTACGCTGACTCGAACGCGAAACCTAAAAATTGGTTGCAAAAATCCGCATTTGTCCTATACAAGTTTTTAG # Right flank : AGGAGTTTTTGAAAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAATACGACGGTATAAAGAAAACGAGATATCCAAATCCTACTCTAAAATTTCCGATGACATCGGAAGCGATTCTGAATCTTTAACTACCGGCAAAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCGGCGGTAAGTTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCAGAGCCGAGAATGTATGCCACATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCTGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGGAACCCGAGATCGCATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAACACATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28-358 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQK01000036.1 Leptospira santarosai serovar Arenal str. 7 contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28 28 96.6 32 .....-....................... CCGTCTGCCTGACTCATTCCGGAAACGTCACG 88 29 93.1 32 .........G...A............... TAAGACACATCTTCGAGTTGGCACTGACCCAA 149 29 100.0 32 ............................. ATTGTCAGTGGAATGAAGAGATAACCGATTCT 210 29 96.6 30 ............................C CTTCCGCAATTTTATTACATAAGACCATAT G [231] 270 29 96.6 31 T............................ CCGGGGAAGCCGGCATTCGTTTGTCTGAGTT 330 29 82.8 0 .......................ATT.AA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TTACCGGAAGGGCCACAAATCTTTAGTC # Right flank : ATTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTACATTTTGGAAAAACTTCACCCATTCAAAGATAGATTTGAAAACGCAATCGAAATCCCAAAAAATATGCCTCAAACGTTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTTGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATCTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTTATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //