Array 1 104249-105951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043908.1 Thermodesulfobacterium sp. TA1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 104249 35 100.0 42 ................................... ACAAGTAAATCATAAATTACTGCAGCTGGATTACTTCCATAA 104326 35 100.0 44 ................................... CTTTCGTGACCGCGTAAATTTAATTTTTTTTCAAAAGTCAAAAA 104405 35 100.0 40 ................................... AAATAAATTGTTTTTAATTATGATATACCATGCTTTCATT 104480 35 100.0 40 ................................... TTGCCTTCTGTATCTCTTAACAATTTTGCGATTTCTTTAG 104555 35 100.0 39 ................................... TTGTAAATGTACGGATTATTTATACTTCGAATTACTTCG 104629 35 100.0 41 ................................... TCCTTTCAATGGGAGAAATCTTTCAAAACTTATAAATAATG 104705 35 100.0 40 ................................... ATTTTTCTCGTTCGGTTCGTAGTTTTTCTTCGATTTCTTT 104780 35 100.0 39 ................................... TGCAGCGGGTGACCGCAATAACTACCACCTGGTACATCA 104854 35 100.0 46 ................................... ACTTGCTAAATAAAAACTCTCTTTTGATATTAAAGTCTTCATATAA 104935 35 100.0 41 ................................... CTCTCAATCAACTCCCCACGGTTGTCGTCTAACTTAGTCCA 105011 35 100.0 39 ................................... TTCGAAAACGGTGTTTGTAAGTGTTAAGGCATCTTTTTT 105085 35 100.0 42 ................................... GAGAAAATCTTTCATTTTTTGTGATTTTTCGGTACCTCTTAA 105162 35 100.0 43 ................................... AAATACACCTCCCCGCAAATTTCTACTTCGAAAAATAAACCTT 105240 35 100.0 41 ................................... AAATTATTTCTTTGATTACGATCCATCCTTCTTTCTCATCT 105316 35 100.0 38 ................................... CAGGGGCATCCCCTTCTTTGCACCACCCCATTCTGAAT 105389 35 100.0 42 ................................... ATTTCTTTTAAAAGCTCTTTTAAAACCATACCTCTACCCCCT 105466 35 100.0 41 ................................... TTTTTCTATGATATAATTCAAAGTTGTTAGTCCTGTTTTTT 105542 35 100.0 39 ................................... AAGTATTTTTGCGACCTCCTGCTGGTTCAACTTTTTTGT 105616 35 100.0 39 ................................... CATTAAAAATATTTCTATGATTATAAACGTATTCTTTAG 105690 35 100.0 39 ................................... TCTACCTTGCAAAAGACTATTATTACTTTATCACTAAGA 105764 35 100.0 41 ................................... AATATTTCTTCTGAAATTTCTATTTCATTTACTTTTATTTT 105840 35 100.0 42 ................................... ATTTCTTTTAAAAGCTCTTTTAAAACCATACCTCTACCCCCT 105917 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================== ================== 23 35 100.0 41 GTTGAAACCTGCCCTACTTAAAAAGGGATTGCGAC # Left flank : TTTAGAATTTCTGTGTTTAGAATAAATTCTAAGGGTAAAATACTAAAAATCGGGACAGATTGGGAAAAAATGAGGTTTGTTTTTTAAAAATTTTTGTGTTAATATTAAACAATAAAGGTTGTTCTTTGACAATAGAATAGCCGGGCAGGGCAGGTGAAAAGGCAAAAGTTTCAAGGGGAAAATTATGGGGATGGTGTGATTTGGTTAAGGGTGTATGTAAGTATATTTAGTAAACAACTATATGAAAAACAGGCTACCTTACAAGCAAGTAATTATGTGGATTGCAAAGGGTGGTTTTAAAGGCTGTGTTTTTGAGTTTCAATCGCAGTTAGAAGAGGTAAAAGGTATATTTATAAATTATTGATTTTATGTAAGAAAAAGTTTGTATCGCTGGCTCTGGAGGTTAGAATTCATGCGGGTTGCGAGGGGCTGTTTTGTAAAAATTAGTTTTATACTAAATTTTAAAAACCTTGATAAAATCAAGGTTTTAAGTAGTTAGG # Right flank : CGGTGGCTCCGCCTGATCTTCCAAAATTTAAGCACGTTTTAATGGGGTTTCTTGAAACCTTTTAAAAGTAGTTTTAGTTTATTCTGGTTGGCTTGATATTTAGTAATCTTAAAATGGCTTATAGAAAGGTATGAGTGCCCAGTAATAGCTTTTTGTGCAGACCTTGGACAGAAAAAAATTGAGCGGAGGTAAAAGAAAAAGGATTAAAATCCAGACCTAAAAAAGTTAATAATAAGGGCCCTAAAAAAGTTTTTATACATTTATATAATTAAAAATTTAAAAGTCTTAAGAAAGGTTGTCTATGGAAAGTATAATAATTATTATTGGGATTTTTATTCTTGCTTTTGTTTCAGGAATGATTGGTCTTGGGGTAGCTTTTTCTGCCATCCCCTTTTTGGGCTTGTTCATGGATGACCTTGTGCACCAAGTACAACCTCTCAGTCTTTTGTTAAACGGGGTTACAGCCCTTCTCAGTGCTTTAGGCTTTGCTAAAAGTGGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCTGCCCTACTTAAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 1434207-1441572 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043908.1 Thermodesulfobacterium sp. TA1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1434207 30 100.0 36 .............................. TTTCTTTTTGCAGTTTATAAAACTTATACATTCCCT 1434273 30 100.0 36 .............................. AAGGACGAAATTGTTATTTACGACGAAACTTTAAAC 1434339 30 100.0 36 .............................. ACTCAGACGTCTTGTGCAGATATATCTTAATTTTCT 1434405 30 100.0 36 .............................. CGCCTCCCGCAAAATCGCCGCTAAAAATTCCTTTAA 1434471 30 100.0 35 .............................. TTTACTTTTAAACACTTAAAAGCAAACATATTTCG 1434536 30 100.0 36 .............................. TTTTTTGTGCTACTTTTTCTAAAGCTGGTCCCTTTC 1434602 30 100.0 37 .............................. GCAAGCATTGCTCTTGCAAGAACACTTCCCATTTTGC 1434669 30 100.0 36 .............................. TCAGGACATAGCGGATGTAGAAGTTTATAGTCCAGA 1434735 30 100.0 36 .............................. TGACTTCAAGCTCTACAAGCTCGTCTCCTAAGAACT 1434801 30 100.0 35 .............................. AGTAGAAAAGGCTGTAGAGGATTTCATTGCTTGGA 1434866 30 100.0 36 .............................. AAAGAAAATATTTTTCGTAAGTGTCCTCTTTGTGGA 1434932 30 100.0 35 .............................. GAAAGGTTATTAATCAATCTTCAGACCTACGCAAG 1434997 30 100.0 36 .............................. CATCCTCCCCCGCATTGACGAAATAGAAGACGAGAA 1435063 30 100.0 37 .............................. TTATGTATTGAATAGCCTTGTCAATTCTTTTCAGCAT 1435130 30 100.0 36 .............................. TACGAGTTTTCTGTCTTCTGTGCAAACTTTGCTTGT 1435196 30 100.0 36 .............................. CGGGATCTTTCATAGGGCTTGGTATTCACGCAAACT 1435262 30 100.0 36 .............................. GATAAGGTTTCAGCGGTATATGTCGCTGGATTTGAA 1435328 30 100.0 36 .............................. TTAGAAATAGCTGGTGCGTCAATTCCTGAAAGAAGA 1435394 30 100.0 36 .............................. CCGGGATGGGATGGGATTTACGGACTTTGGAGAAGA 1435460 30 100.0 36 .............................. CTGTAATAGAAATAGAAATTAGAAGAAATGAATAAA 1435526 30 100.0 37 .............................. AAGTAGGTGAGGAATGGGAAGTATCCATTATTGATAA 1435593 30 100.0 37 .............................. TTCGTATTTGTCAATGACTTTATAAACTTTTTCCTCA 1435660 30 100.0 36 .............................. CATAGACAGGCTCAGGGACATACTCAGATTTTTTCG 1435726 30 100.0 36 .............................. ATAAATGTCTCACCAATAACCGCATCTGTTAAATCT 1435792 30 100.0 37 .............................. AATTTTTGGTGAGCCGTTTGGGGTGGATGGCAGTTAT 1435859 30 100.0 37 .............................. AACCTGATAGTGATATAGAATTTTTTGATTTCTTAGC 1435926 30 100.0 37 .............................. CCCTTATATTAGTTATATTTCTACCCATTGAAGCTTC 1435993 30 100.0 35 .............................. CACTAAGACATAATCTTCGTTGATTTCTCTTTCAA 1436058 30 100.0 36 .............................. TCTGGTAATCTTTGCTTTAAAGCAAAGTGAATACCT 1436124 30 100.0 36 .............................. CTTTTTTTCTGCTCTTTTTATCTCTTCTTCGTTAAC 1436190 30 100.0 36 .............................. ATTAGTTCTAATTGATTATTTTCAATAAATAGAGCT 1436256 30 100.0 36 .............................. AAATCGATGCGGGGTATTTTTGAAGAGAAGAAGCTT 1436322 30 100.0 36 .............................. GAGGGCGGCGAGGTTTTAGATCGTCAACTATATGAA 1436388 30 100.0 36 .............................. TTGGAGTAATTCCCGAGCTTCATCAACAGTAATTCT 1436454 30 100.0 36 .............................. TATACTTTCAAATAAACACCTCATATCATCATTATA 1436520 30 100.0 37 .............................. CTATTTGTCGAAGTCTTTGGCAAGCATGATGACCCCA 1436587 30 100.0 36 .............................. TGTTTGGTTGTTTTGATATTAAATGTGTAAAATGTT 1436653 30 100.0 36 .............................. TTTGGTGTCCCAGGTGGCAGCTTTTGCTGCCACCCA 1436719 30 100.0 35 .............................. GAAGAAAAAAGGAACTTATTTTCTGACAGGATAAG 1436784 30 100.0 35 .............................. TCTCCTAACATACCGAAATTCAAGTGTCCGTTATG 1436849 30 100.0 36 .............................. CTGGGGCTTTTTGCATATTGGCTTGTTTATTTATTA 1436915 30 100.0 36 .............................. GCCGTGTAAAGCCCCTTTATGAATTGTTTAGTAATT 1436981 30 100.0 36 .............................. ATTTTATAACCAAATACATTGATAGACTGCTAAATC 1437047 30 100.0 36 .............................. CAGGTTGGCAGAGGGGCTATGAGCTTTGGAGAAAAT 1437113 30 100.0 35 .............................. TTTGTCGTTTTTGCAACAGATAATGAGACACATAG 1437178 30 100.0 36 .............................. TACGTCGATAATGGTATTTTTGATGATAACAAAAAT 1437244 30 100.0 36 .............................. CAAAAATGAGGGGACACTTTCAGGAGAGAATGTCTC 1437310 30 100.0 36 .............................. GAGCCGGCGAAGGGATCTAAAATTATGTCATTAAGC 1437376 30 100.0 35 .............................. AGGTAGGTTTTCTTGCTCTTCTTTTTCTCTGAAGG 1437441 30 100.0 37 .............................. TACCCCGCAATGGAACGAGAAAATATTTATTATTCCG 1437508 30 100.0 36 .............................. AAGATCTTTATAAATGTCTTTATAGTGCTTTTTAAG 1437574 30 100.0 37 .............................. CTCTCTTTCATCTCATCATATATCTTTTTCGCAATTA 1437641 30 100.0 36 .............................. TCTTCTACATACAACTTCCTCAACATCTCTTTCTCT 1437707 30 100.0 36 .............................. TGAAGCTTCATTTCTTGAATTAATGCACTAATCGTA 1437773 30 100.0 35 .............................. TCTTGGATTTCTTTTCCACGGTAATGATTTAACGA 1437838 30 100.0 37 .............................. GCTGTCTTTCGGTTTTACAGTTACATCAAACAAATCC 1437905 30 100.0 35 .............................. TATTGATAAAGGAAGGTTTTTTATCGCAAAGCCTA 1437970 30 100.0 36 .............................. AAAAAAAACAAAACACTAAGAACCTAAAGCAAACTC 1438036 30 100.0 36 .............................. TTTACAATAAAAACAAATGGATTTGAGTTCGACGTT 1438102 30 100.0 35 .............................. AAAAAGAAAAATTACATACCAAGCCCTGTCTACGA 1438167 30 100.0 35 .............................. AAATAAGATCCATCGTTAAATTGCTCAAGGTCTTT 1438232 30 100.0 36 .............................. AAAGTTGTTTGTACTCATAACACACCTCCTTTGCTA 1438298 30 100.0 36 .............................. GTGCATGCCCTCATTTGGGGAGCATGGGGGACAGGG 1438364 30 100.0 35 .............................. GCCTCTCTGTTTAGCTAACTTTGCTATCTCTTCAT 1438429 30 100.0 36 .............................. TTGGTTGAAAGATAGTAATTTTCTAATATTATACTA 1438495 30 100.0 37 .............................. AGTTGAAGTTTAATCGTAAAAAAGCCATAGACTTTTC 1438562 30 100.0 36 .............................. CTCGCTATATCCTCTTCATTCAGAAGTTTTCTCTTC 1438628 30 100.0 37 .............................. AATAATGATTTGGAGTTTTTTGATTTCTTAGCTCAAT 1438695 30 100.0 37 .............................. GAATGAAACAAAAGTAGATATATTATCAGTTGCACGG 1438762 30 100.0 38 .............................. GTGGTGTGGATGTGGATGTTTTATTAGTCTTAACAAGG 1438830 30 100.0 37 .............................. CAGCATACACCACCAACAGAGATATGGCATCCATGTG 1438897 30 100.0 36 .............................. ACGACTACTATTTTATCCTTGTTTTCTACTACCTCA 1438963 30 100.0 36 .............................. GACCAAATCTCTCTTGCAAGAAGGATGAAGTAGTTT 1439029 30 100.0 36 .............................. TGCTCTTCTTCTTTATGTTGGTATTGTATTTGCCTT 1439095 30 100.0 36 .............................. ATTCTAATTTCAGCCATTTGCGCGTAATCAAACTCA 1439161 30 100.0 36 .............................. CACAATTTGGGTCGTCACAGAAGTGATATATATTTT 1439227 30 100.0 37 .............................. ACTACATCAAGTTTGTTTTGACCATCCGCTCTGAACG 1439294 30 100.0 34 .............................. TTATAAAGATGAACCTCCGTTCTTTTTACCAAGA 1439358 30 100.0 37 .............................. ACATGTACCTAATGAGGACTACTTTGAATACTTCCCG 1439425 30 100.0 36 .............................. CTCTGTGAAAAATTCGTCATTACGAATCAATTCTTC 1439491 30 100.0 36 .............................. ACATGTCCTACATCCTTTTTTCACTTTTCAGTGAAA 1439557 30 100.0 36 .............................. AAAAAGGGTTTAGAAAAAGAAGAAAAACGGCTTTTG 1439623 30 100.0 36 .............................. CGCATTTTCCCTATTTGGCTTTTTAACAAAAACACT 1439689 30 100.0 37 .............................. TTTTATAACAACTAATACACCATTTAAAAATTTACAA 1439756 30 100.0 36 .............................. AAACGTTCGCAATCTTCATTCGGAATATAAACAGGC 1439822 30 100.0 36 .............................. GCTGTTTGTCCTAAATATGAACCTCTTCCGTTTGAA 1439888 30 100.0 36 .............................. ATGCCTGCTCCTTTTCGTTTTGCACGAAAACGCTGC 1439954 30 100.0 37 .............................. CGATTCATGATTATGAATTGTTTGAATTTTTCTTCAA 1440021 30 100.0 35 .............................. GACCCGCGGGGGGCTACGTCGATTGTAGTAAACGA 1440086 30 100.0 37 .............................. GCGAGGATCTCTCGCGGTTTCTTAAGCGATTGCTCAA 1440153 30 100.0 37 .............................. AAGGAAAAGCCCCCGTTGGACGACGAGGGGCAGTTAG 1440220 30 100.0 35 .............................. CGAGAACTTCAGCCGGTTTTTTAGTTGACTGCTGT 1440285 30 100.0 36 .............................. TGGAGAAGGCAAGTTAAGGCAAAAAGCTTTTTCGTA 1440351 30 100.0 36 .............................. AAAGAAAGCTTAGCTGGAGCTTCTTTTTTACGTGAG 1440417 30 100.0 37 .............................. CTTAACGGTAAGGTTCCAGTAAAGGGTTTTCGGCTTG 1440484 30 100.0 36 .............................. AAAAAAAAATCAAAAAAAATGTTTACCGTCAGCCTG 1440550 30 100.0 37 .............................. TTGTAACGCTGATAACTAATCCACAGCTTTGGGGATG 1440617 30 100.0 36 .............................. TTTTCAGAAACTGAGCAAGATTTGTCGCTTTTACAC 1440683 30 100.0 36 .............................. CTGCTAACGTCTTTTTTTCTGCAATAATTAAATAAT 1440749 30 100.0 37 .............................. TCTATGAAGCAGATAAATTATGTAAAAGATTTGATGG 1440816 30 100.0 37 .............................. GTTTTTACTGTCTCTCTGTATATAGTTTCTTTTTATA 1440883 30 100.0 37 .............................. GTTCAGGTAGGAAGTGTAAAGGTGAGGTTTCCGAGGG 1440950 30 100.0 36 .............................. TACAAGTTTAAAGTAGAACTGACTTCTACAGATAGA 1441016 30 100.0 35 .............................. GAAGAAATAATAAGTAGAGTTTATGATTATTTGAT 1441081 30 100.0 35 .............................. TGAGGAGGGTAAGAAAGTGCCGGGTGTTGTGCGGT 1441146 30 100.0 37 .............................. GGATGCGAAAAATCAAGTGTTAAACTAGTTTTATATA 1441213 30 96.7 37 .............................G CTTTATGGAGCGTTTATTTATAATGATACTTTAGCTG 1441280 30 96.7 36 .............................G AAGCTTTTAGCTTGTTAAACATTTTACCTTTGATAG 1441346 30 96.7 36 .............................C TTTGCTAATTCTTCATCGTATAAATCTATTAACTCC 1441412 30 86.7 35 ...GCG.......................C ACTTTCTAAAAACTTTCTCAATTTTTCAACTAAGT 1441477 30 86.7 36 ...GCG.......................C TTCGATATATTTTTAGAAAATAAAGAAATAGTGGAT 1441543 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ====================================== ================== 112 30 99.6 36 GTTTTAAGCCTACCTATGAGGAATTGAAAT # Left flank : TTCAAAGGATTTCAGGTTTTAAAACTTTCAAGAGAGCAAGCAGAAGAAGTATACTGGTATGGAATTGATAAAATACTCAAAAAAGAGGAAGAAGAAGTATATTTTGATAATATTATCTAAATTTTAAAGGTGGGACCAATTTCATAATTTATTTTAATTATTTTAACCCCTCTGAAAAGTATTTAAATTCTTAGAGATTGATTTAAAATTTTGAAGTAAAAAAGTGAAAAAAGAGATATTGAGACGAAAGTATAGAAAGTTGATAAACTACAGTGCTTTCTCTAAAAAATTTTTGTACAATAAAAAGAACACTGTGTTTTAATGCTTAGACGGGATGAGACAAACAGATTTTTTAAAATACTTAGTAAAAAATTTCTGTTCTTTGACAATTGAATAAAAGTTGATTAATTTAATAAATTTTTATTCTTTGCTTATAAGTTGACGCAAAAATGAGATTTTATTTTTTTTGAAATTAAAGTATATTTTAAATTTAAACTACG # Right flank : GAAAATTTTAATTAAAATAAAATTTTTATTTTATAACTTCAAACATTCCAAAACCTTGGGAATTTTTTGCACCAAGGCCTGCATCGTAAGCAAGTCTTAAAAGTTCTGGATCTCCCCTTAGCACAAAATTTCCCATCCATCCCTTTATCACAAAACCCTTGTAAATAATTATCTTCTCGTTTCCCTTTTCCAGCTTAATAGGCTCTATAAAAAACTCCTCTGAAGGTGGCATCTTCTTGTAAAATGCCTTATACTTCTTTATGATATTTTCCTTCACAAGCATTGAAAAATTTTTCTCGTTTGGATGATAGTAATAAGTCTTCTTTTTACCATCAGCACCATAAAGTGTGCTATAAACTGTCAAAGGTGATAGCATCCGTATAAGGATTTCTTTTCTTATCTCAGGGGATGGAAGAACCTTTATAGACTCAAGCCAAACTCTGTTTACGTCAAGCTGTATCTCTTTATTATACAAAAAATTTGAGGTAAGACTCAAAAGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAGCCTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 1637618-1641408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043908.1 Thermodesulfobacterium sp. TA1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 1637618 35 100.0 39 ................................... TTCATTTCTTACCTCCTCCTCCTTAAATTTTTTTGTTTT 1637692 35 100.0 44 ................................... TAGAAATTCTTATCTTAAATCTAAAGTTCCTGTTCTTGTTTATT 1637771 35 100.0 40 ................................... TCGACTTTGTATTTCATTTTTATTGTATTTAGTATTTCTG 1637846 35 100.0 37 ................................... ACCTACTGGGGGCTTTAATTTTTTAAACCCCTAAAAT 1637918 35 100.0 39 ................................... AAAAAGATTATTGATATTTGATATTTTAGAATTTTTGAT 1637992 35 100.0 36 ................................... TTAGCAATAGTGCTTAGTGTTTGATTGGGTACAAAA 1638063 35 100.0 40 ................................... ACATAATAACCTTTCATTTTACACCTCCTCCTTTTTTTAG 1638138 35 100.0 40 ................................... ACATAATAACCTTTCATTTTACACCTCCTCCTTTTTTTAG 1638213 35 100.0 38 ................................... TATATTTTTTATTTTTTTTTAATTTTTTTCAAGTCATT 1638286 35 100.0 37 ................................... TCAATATTTCATTTATTGGTATTTCTATCTCTTTTAT 1638358 35 100.0 37 ................................... CGAGTATTTCTTTTATTTTAAATAAATATGGATTATT 1638430 35 100.0 39 ................................... AATGGTATACTATACTTTTCTTTTTTTATTAGCTTAAAG 1638504 35 100.0 43 ................................... AAGCTTTTTTGATGTAAGACTTCATCTTTTGGGACTTTTCAGT 1638582 35 100.0 40 ................................... AAGTCTATATCTTTTAATATTACAAAATTATATTTTAATA 1638657 35 100.0 44 ................................... TAGATCTCTTCTATATACCATATACCAACCTAAACCATATATAT 1638736 35 100.0 38 ................................... TTATATTTTTTATTCTTTTTATTTTTTATTTTTTAAAA 1638809 35 100.0 41 ................................... ATTTAAACTTTTGATAAATTGATCATCTATTTCTATTTCAG 1638885 35 100.0 39 ................................... ATTATAAACAATAAAGCTTATCAAAAAGTTATCTAATTT 1638959 35 100.0 36 ................................... ACTTTTTCTCAAAAGTTACGAAAAGAGAGTCTTTTA 1639030 35 100.0 36 ................................... GTAAAGAAAGCTTTTCATTTTATTGGCTTTCTCAAA 1639101 35 100.0 37 ................................... AAAAAACTATCAAGATATAACCATAACGGAGTAGCTA 1639173 35 100.0 39 ................................... TAAAATCCTCTCATAACTTACCTCCTTTTTTTTTGATTT 1639247 35 100.0 37 ................................... TTTTCAGAAATCTTTTTAACTCAAAGCTATTTAACCG 1639319 35 100.0 43 ................................... AATTTTTCTTTTTCTATTAGCATTTTTCAATCTCTATATTATT 1639397 35 100.0 39 ................................... TATCGAGGTTCAAAGTTCGATAAAGAAAGTCTTTCATCT 1639471 35 100.0 34 ................................... TTAAGGTTATTCAAGGTTTCAGGTTTAGTAAAAA 1639540 35 100.0 41 ................................... ATTAAAAAAAGATTAAGAGGCAAGCTTAATGGCTTGCCTCT 1639616 35 100.0 47 ................................... ATGTCTACACCTCCTCTTATTTTAATTTTTTTTATTTTTCTATTTGG 1639698 35 100.0 39 ................................... TGGTATAGACTTAATACAAGATTTTTTTAATATAGAAAT 1639772 35 100.0 43 ................................... CCATGTTATTTGCGGTATATATTAGTTTTAGATCTCTTCTATA 1639850 35 100.0 39 ................................... ATTCAAAACTAAAATATCTGTTATCTATTATCCTGTACA 1639924 35 100.0 38 ................................... TAATTAGAGATACATTATTTGTAAACTTTGAGAAAAGA 1639997 35 100.0 47 ................................... TGGCTTTTTTCGCTACCTTTTAATGATAGCCTTTTTTCAAAGCTTAT 1640079 35 100.0 39 ................................... AATAAAATCCTTTCATTTTAAACCTCCTTTTTTTAGTTT 1640153 35 100.0 40 ................................... TTATGAATAAACTACCATTAATTAAAATGTAAAATCCTTT 1640228 35 100.0 42 ................................... TAAAAAATAATTTTTCTTTTTCTATAATCATTTTTTATACCT 1640305 35 100.0 44 ................................... AAATAGTTTTTTTGCTATTTCAAAAAATATGTCGTTATTATCGG 1640384 35 100.0 43 ................................... AAGACATTCTTGCATTAATTTAGAATAGTGACTAGCAGTAAGA 1640462 35 100.0 44 ................................... AAGTTGTTTAGTGGTAATATCTTTGTAAAGCATTATCATTTTTA 1640541 35 100.0 39 ................................... AAATAGTATCCTTTAATGTCAGAGAAATCATATCCACAT 1640615 35 100.0 42 ................................... GCGGCTAGCTTCTTAGAGATAGAACATGCGAGAGACTATAAA 1640692 35 100.0 44 ................................... AAGTTGTTTAGTGGTAATATCTTTGTAAAGCATTATCATTTTTA 1640771 35 100.0 39 ................................... AAATAGTATCCTTTAATGTCAGAGAAATCATATCCACAT 1640845 35 100.0 37 ................................... TCTTCCTGTAAAGTCTTCCTTACTCTTAAATTTTCTT 1640917 35 100.0 42 ................................... AAAACCTTCCTTCCCTCTTCTTCCAGTCCTTCCATGATACGT 1640994 35 100.0 43 ................................... CCCCCTTTTTTATCTTTTTTAGCAGCTTTTCTAGATTTTTTAA 1641072 35 100.0 39 ................................... GCGAGAAAACATATCTTAAAAAAATTTGCTTTTCTTCTG 1641146 35 100.0 39 ................................... TAAAGGAGATATTATCATCTTAAAAATAATCCCAAACAT 1641220 35 100.0 40 ................................... CTTAAGATTAAAGCTTTTCCTTCTTTGCTATAAGAATAAT 1641295 35 100.0 44 ................................... AAGTCTCTTTAGCCTTTTTTTCTAAATCCTGAATAATTTGTACA 1641374 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================================== ================== 51 35 100.0 40 GTTGAAACCTGCCCTACTTAAAAAGGGATTGCGAC # Left flank : TTTAGAATTTCTGTGTTTAGAATAAATTCTAAGGGTAAAATACTAAAAATCGGGACAGATTGGGAAAAAATGAGGTTTGTTTTTTAAAAATTTTTGTGTTAATATTTAAACAATAAAGGTTGTTCTTTGACAATAGAATAGCCGGGCAGGGCAGGTGAAAAGGCAAAAGTTTCAAGGGAAAATTATGGGGCTGGTGTGGTTTGGTTAAGGGTGTATGTAAGTATATTTAGTAAACAACTATATGAAAAACAGGCTACCTTACAAGCAAGTAATTATGTGGATTACAAAAGGTGGTTTTAAAGGCTGTGTTTTTGAGTTTCAATCGCAGTTAGAAGAGGTAAAAGGTATATTTATAAGTTATTGATTTTATGTAAGAAAAAGTTTGTATCGCTGGCTCTGGAGGTTAGAATTCATGCGGGTTGCGAGGGGCTGTTTTGTAAAAATTAGTTTTATACTAAATTTTAAAAACCTTGATAAAATCAAGGTTTTAAGTAGTTAGG # Right flank : CTTTTGCTTTTCCATTTTTTTATCTCCTCCTGCAATTTTTATGTTAAGGTTTGTTTAACACATTTTGTTTTGTATAATAAAACAAAAGCTTATAAGTTAGAGAGGGACAGGGACTCCATTTTTGGTAGGCCTTTGAGCCTCTTAAGGAGTATGTCCCTCTGTCCCTCAACACCCGATAAGTTGGTTGGGCTACCAAAGCCCCAGCTACTCGGGAGGATGGTGTGAGGGACAAAAATCTTAAAAAGGAGGTAGCATCATGACCCATTACATCGGTGTTGACATTTCTAAAGATAACTTCCACTTCTGCATCCTTAACCATGAAGCTAAAACCCTCTCCTCCGGCAAACTCTCTATGTCTCTTCAAGGCTTCTCTGATTTCTTTAACCTTCTCAAAACCCTCTCTGACCCTATCGTTGTTATGGAATCCTCTGGTAGGTTCCACATCCCCCTTTACTGCTTCCTCGTTGAAAAAGATATCCAAACCTTCATCCTTAACCCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCTGCCCTACTTAAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //