Array 1 426492-423262 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDA01000001.1 Bifidobacterium pseudocatenulatum strain OF01-2 OF01-2.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 426491 36 100.0 34 .................................... AACCAGTTGACGTCCACCGCGCCGCTGATGCCGC 426421 36 100.0 37 .................................... ATCAGAGACGATGCGCGTCTTGCACCCTGCTGCGCAA 426348 36 100.0 35 .................................... TATCGTTCGCAGGCGCATTACGACACGTATGGCCG 426277 36 100.0 36 .................................... TTGATGGTGGTGCCACTCATGGTGCCGGACGCGAAA 426205 36 100.0 39 .................................... CGAAATACCGCTGGAAGCAAGGTCAGTCAGCGGACTGAT 426130 36 100.0 37 .................................... TTTGCCATAGTACAGTCGGTAAACTCGATACCATCCA 426057 36 100.0 37 .................................... TTGCAAGCGCCGTCCGAAACTCCACTGCGCAATACCG 425984 36 100.0 39 .................................... AGGCTTGACATTGGCGCTCAGCAAGCGAATCAGCAACAA 425909 36 100.0 36 .................................... AAAAAAGGCGAAACCGTGACCGTCGAAGACTTCGAC 425837 36 100.0 35 .................................... TGATTGATCCGTAAGCTTTGCCGCATTTCTGGCAG 425766 36 100.0 35 .................................... GGCGACCAGTCGCACGACCATTCAGAGGCCGTCCG 425695 36 100.0 37 .................................... GTGGAATGCGCTCACTGCGGCGAGGTTGTCGGCACAT 425622 36 100.0 36 .................................... TAGACGGAACAGCCGTCCGTCTCCTGTTCGAAGATT 425550 36 100.0 37 .................................... CGGAAAAGTGTGGGCAAAATGTGGGCACGGCTCACCA 425477 36 100.0 36 .................................... TATGACAAATTCCCACAACTCGAATCGGACACCAAA 425405 36 100.0 37 .................................... CCCAACGCCGTGCATCTCGTGTCCGACTGGACCGAAG 425332 36 100.0 36 .................................... TTGGGTGACGACGTGTATGGCCGTTATTCGCTGCCG 425260 36 100.0 38 .................................... TCAATGACACGCTCAGCTCACAAAAAATGAGAGAAGGC 425186 36 100.0 36 .................................... GCGCGTGTATTCGGGCATCTCGTGGTAAAGGCGGCG 425114 36 100.0 36 .................................... ATCGACCCAGCTCACCCCGAGATCGACCAGACCGTT 425042 36 100.0 36 .................................... GTTTCCTCCGTGGAGTATTTGCATCCGCCGCTGACT 424970 36 100.0 36 .................................... GGGCTTGATGTCCTGCCATCCGTGAGCGCACCATAC 424898 36 100.0 39 .................................... TTCCGTGGCGAACGCTGGCAATGGGACGCATACGCGACG 424823 36 100.0 35 .................................... TCCATAGGCCTCATCTACGGCGGCCAGGCGAAGAC 424752 36 100.0 36 .................................... ATTCCCGGATACAATGCGGCAGGCGCGGACACTACG A [424751] 424679 36 100.0 37 .................................... AGCAATCCGGTTCGCCCACAGCCTCTGGAAGGCTGAG 424606 36 100.0 36 .................................... CATCTTGTATTCGCGGCGTGACATGAATAGCCCGAA 424534 36 100.0 38 .................................... GCGCCGACGAGAGACAGCTACCTGCCGACCACGTTGAG 424460 36 97.2 37 ...............................A.... CTCGCAGACCTGCTGACCGGACGCCGCATCATCCCAC 424387 36 100.0 34 .................................... TGAACGCGGTGCTTTTCCGACTATTAGAGGGGGG 424317 36 100.0 37 .................................... CTAGATCTGCCCGAAGGACTGGATACGGGCAAATGCA 424244 36 100.0 36 .................................... CCGGAACAGCCGCAGCTCGACCCGACGCTGACCGAC 424172 36 100.0 38 .................................... GGCATCGATTTGACCATGTTTGACGTTTCTGGAGGTGT 424098 36 100.0 39 .................................... GCCGCGCTGATCGTACTCGCGTAAAATGTTGAGCAGTTG 424023 36 100.0 38 .................................... GACCAACGTGTGGCCGAGATCACCGGCACGACGGGCGA 423949 36 100.0 38 .................................... GGTCAGCCATCGGTCACCCCTGAAAATGTTTCGCGCGG 423875 36 97.2 35 ........................A........... AATGCAATGAGCTGGGTTACCCCATGGCGAGACTC 423804 36 100.0 34 .................................... GAAGAGCATGGAGGGTTTAATCGTTCATGTTGAT 423734 36 100.0 35 .................................... ACACTGCGTTGCGGCATGGCTTGCTCCTTGTTCCA 423663 36 100.0 35 .................................... TTGGACTGGGCAAGTTGGTCCTCAATCTGTTTACG 423592 36 100.0 37 .................................... GAGGTAGCCAGAACGGCGACGGCGTGTTCGCCAACGC 423519 36 97.2 41 ..............T..................... AAGGACCGCACCTTCTTGTACCGCCTCGACTCGTCCGTGAT 423442 36 100.0 37 .................................... ATATCAGCATAAGGACACTCGCCACATGTCCAAGAAT 423369 36 100.0 36 .................................... GCGGAAATCACCGACCGAATCCACCAACTACAGGAA 423297 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ========================================= ================== 45 36 99.7 37 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGCGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCGAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTAAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAACCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCGTCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCGCGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATTGCGTTGGGTGTCGCGAGTATTGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //