Array 1 3035041-3036846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073766.1 Chitinophaga sp. KRA15-503 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3035041 29 96.6 37 ................A............ GTTGAATACAGGGGCTTGCACGGTGCCGTCTTTGTAC 3035107 29 96.6 36 ................A............ GGCGGAAACAAGGCTGGTATTGAGTTTTGCTAGTTG 3035172 29 96.6 38 ................A............ GTTACTTTTTACAATACACTATAATTCCAACTTACGGG 3035239 29 96.6 37 ................A............ GTGGCAGGAAATGCACTGGAAATATTCTCCTTCCGAA 3035305 29 96.6 36 ................A............ GATAAATCTGGTAATGGTATTCCGGCGTAAGCTGTA 3035370 29 96.6 36 ................A............ GTTGAAAAAATACAGCCAGTACTGTTCTGCCAGGCT 3035435 29 100.0 38 ............................. GGAAACTAAATGTGAATGGATTTCGGAAATAAAAGCCC 3035502 29 100.0 37 ............................. GTTGTTTGTATGTTCTCCTTCTGCATTTTCTTTCCCT 3035568 29 100.0 36 ............................. GAAGTTAAATATGGCAGAAATTGGTGCCGGGAGGTT 3035633 29 100.0 37 ............................. GCCTTTATGGTAAGTGTCGAATCCATTTGCGAAAACA 3035699 29 100.0 37 ............................. GTTACACCTTTAATAGCCAAACCATGACAGCCCATTT 3035765 29 100.0 38 ............................. GACGTTCACTGTGTACAAAAAAGGCATGTAACGAAATT 3035832 29 93.1 36 ................A.C.......... GTTTAATTGCTCTGCGAGATCATGGTAAATATTGTC 3035897 29 93.1 35 ................A.C.......... GGCTAATGTTAATGCCTGAAGATGCAGATATTCCG 3035961 29 100.0 37 ............................. TTTTTTTGCGAAATAACCAGGTGAAGAAATCTGTAGC 3036027 29 100.0 36 ............................. TAATTCACTACTATGGTTCTCGAAAGATGTGGTATG 3036092 29 100.0 37 ............................. TTTGAATATCTTCACCTGTTTAGAAGTCACACCCATG 3036158 29 100.0 38 ............................. TGGATAGCATGTTTCTGCACCCGTACAACGGCAAACAA 3036225 29 100.0 38 ............................. TCCGGCATATTTTTTCAACGTTACCACCTCTTCATTAT 3036292 29 100.0 37 ............................. GAGGTCAAAACCCGTCGTTTCAGGTCTGGTCGCTGTA 3036358 29 89.7 38 ........T.......A.C.......... TACATCTTGAGGATATCCATCTACTTCATCTAGTATAA 3036425 29 86.2 38 T......AT.......A............ TGTTGCCGGGAATATCGTACCTGTTGCACGTTTTAAAA 3036492 29 93.1 36 ..........A.....G............ CCGACCTGATTGACAAGATCAACAACCTAAAACCGG 3036557 29 79.3 37 .GA.....T.C.....GT........... CTAGTCTTTTGTTATGTCCCTACTTTCGTCGTGTGAT 3036623 29 79.3 36 .GA.....T.C.....A.T.......... GGTTGTCCACAGCACTCCACATTGCGCATCTGTGTA 3036688 29 89.7 37 ....C...........A.C.......... GTTTGACAATGGCCCGGGCACAGCCCAGAATACTTTG 3036754 29 89.7 36 ............T...GT........... TACTTCTGCCGGATCGGTACTATTAAACCAATATGC 3036819 28 75.9 0 .GA.....T.A.....AA.....-..... | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 94.6 37 GTTTTAATCGGACCATTGAGGAATTGAAA # Left flank : TGAAAAAAATAATCTGTATCCGGTGATTTCATTTGCTTTCACCTACGAACAACATCAACCCTACCTCAACGACACCACCGGACTTCCCGCCATCTATAAAGACTATACCGGCGATAACTTCAAAACCTCCCATCTCCCTAAACTCTGGAGTAACCGCCTCAAAGAAAGCCTGCAACAAGGCGATGTACTCTACTTCGACGAAATCATCATCAAATACACCGAAGACAAACTCTATAAAGCACCATCACTACGGATCGATATCAAATAAGTACATAAATTGTATCTTAGTTGTCGTCCATGATACGTTAAAACATCACCAATACATTTATCCAATCTTTGTTGCAAAGAATAATTAATTGATTTTCATTGAATAAGAGTAGTCGTCGATCCCCCGGGGAAATCATATGATTACACATCGACGACTTTTGCGACTTAAAAACATAGCTTAAAACAATGATAAGCTATTGATTATAAGGATTTTTTGTAGCTTTTGATTTGGG # Right flank : ACATGAAACTTTTCCATCCTACTTTAATCGGTAACCCAATGGCAAAACGCATGTACCAGTGTCATGTTGACAGAAGTCTCTATGTCAATAGATTTTTTACATAGGGAATTTTCCAAAATGGCATGTATTCTGGCCAATTTAAAAAAAACGAAAAAAAGAAATGTATAAATGGTGCTGACAAAAAGCTAAATATCAAATATAGAATCGTCTTTTTAGAACTATCGGAGGTAAAAGAACATTCATTAACATTGGTACAGGGTAATATATCCACCATTTCAGACCCCAATTTGCTCCATATTTCCCAAATAACATTCCAACGATTACGGTAAAAATTGAAAGTATAAAGATCAGATGGAATTTACGGGCAAACTCCTGTTTACCTAATACTATCCAAATAATTAAATAAAATACAATGAATGATGCAAAAATCATTACTGGAAAATGCCAAATTGCATTTAAGCGCTGCTCCATGTTTAAAATTGTATTAATGCAAGTCTCTT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACCATTGAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 5413078-5413957 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073766.1 Chitinophaga sp. KRA15-503 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5413078 29 100.0 37 ............................. CTAGATGGTGCCAACTATCAATTGATTGATTCAGCCG 5413144 29 100.0 34 ............................. TATCTTACAACCACTTTTCTGGCATTGGGATCTG 5413207 29 100.0 37 ............................. TTTGTTTCTTTCTGTTAGAGGCAGCATTTCGTATGTG 5413273 29 100.0 37 ............................. CCTTTATTGGCCTTTGGAATTTTGCCGACGATTACGG 5413339 29 100.0 37 ............................. TTCGCACGATTTAAGTCCTTAACACCAAATTCACCAC 5413405 29 100.0 35 ............................. TTTTTATAGTATTCAATACTGTCAATGAGCAGCTG 5413469 29 100.0 36 ............................. TGTGGAGAGGTGATAACAAGGCCTCCTGAAATCTTG 5413534 29 100.0 36 ............................. GTAAAACTGGCGCCCAGCCGTGCTGATATGGAAAGG 5413599 29 100.0 37 ............................. CCCGGTAGGCATCATTCTTTTTAAAGAAGGATAATCC 5413665 29 100.0 37 ............................. CCGGCTAAAAAACTTGGCGCGAATGGCTTTTCACCCG 5413731 29 96.6 36 .......................G..... ATAAGCCATGGACTGCGAAGTATCGATAATATAGTA 5413796 29 82.8 36 ........T.G..C..AA........... TGCATGGCTATAGCGTCGGTTACGGTCCCGCCACCA G [5413814] 5413862 29 79.3 36 ........T.G..C...AG.........G AGGCATACTCCCTGTATTTCTGCATTGGTCAATACT T [5413876] 5413928 29 79.3 0 ..........A..C..CA......A...A | G [5413946] ========== ====== ====== ====== ============================= ===================================== ================== 14 29 95.6 36 GTTTTAATCGTACTATGTAGAATTGAAAT # Left flank : TGAGATGAGTGAAATGGAACATGGAGGGTTGCATAATGTTTGGGGTTTGATATATACTAATATACTATAAATATGTATTGTGGACATATTTATATACAGAAAAATTTTTTGCTTTCATCCGTTTTGCGTATATAGCTAAAAAATTAGCATTAAAAGCTTATACATGAGTGGCAAAATATTTAACCGGATAAAAGCAGTCCTGGCCGAAAAACAAAAAACTAATAAATGGCTGGCAGAAACGCTCGACATGAACATTAACACCGTCTCCAAATGGTGTACAAATAAAATACAGCCTACCATTGAAACACTTTTCGCCATCGCCGAAGCGCTCAATGTTGAAGCAAGGGAATTACTGGTGGAACGAAAGAAATCCTAGAAAGTCGTCGATCCCCGGGGGGAATCTTATTATTAGAGGTCGACGACTTGTTGTGCGGAAAAATTGGTAAATTGGGAGGATGGAATGCTTAATGGGCAAGGGAGGTGCGTTTGAAATTGTTAGG # Right flank : ATAGTACCTTTATCTGCCTATTGCGTTTTTAAAAAAAATGCTTTAATCGCATCACTAAGACTTTGAAAGTTTTTAACCCAAAAAATCTTCACACATGTACATCTACAGAACTTTGCATCATCCAGAAGGATGGAGAGGGCAGGCTGAGTTTGAGATCCGAGATAACCAGATCTTTACAACTGTTAACCATGCCACTGGAACGCATACGCAGCCCTGGTTTGAGATTAACAATGACAAGGTTTATCCTACTATGTATCACCCTAATGGGCGTAGTTCTTTTGCTTGGTTTGAAATTCATGAGGATAGTCTGAAGACGGCTGTTCATCATCCGAAGGGTGCACAGGGATTACCTTGGTATAAAATACAGTAGGAATCCTCATGAATAAGAGGTGATAATGCACCTCTTATTCATCAAAATAATCGTCTTTGATATAAGTGTCGATGAGTGTTTTTTCGTCTATTTCAATACCTCGAAAGTGTAAATTAATTTTTCGCTCTTG # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACTATGTAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 7416396-7414787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073766.1 Chitinophaga sp. KRA15-503 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 7416395 29 100.0 39 ............................. TGACATTCCACCAAAGGTTTACGTACTATCTTCGGGAAG 7416327 29 100.0 38 ............................. TCTCCCTATGTTTATTGATGTTCCTTGCTGAACCCTAA 7416260 29 100.0 37 ............................. TCTTACGAGGGTCTACCACATAAGTACCAACTTTTGG 7416194 29 100.0 36 ............................. TCAGTTAATCATCCAGCCGGCTTTGTTCAAATTTTC 7416129 29 100.0 39 ............................. TTGAGGTTTAAGCGGGTCTTGCGGGCCGCGAAGAAGGAA 7416061 29 100.0 36 ............................. TGATATAGCGAGATTGGCTCCGAAGCCGATAATAGT 7415996 29 100.0 37 ............................. TGTAGCAAACCCAGGCAGCATTTCATTGGCAATTTTT 7415930 29 100.0 36 ............................. TTAAATATGATATGCTTACAGAAAGAGCCGCGAACA 7415865 29 100.0 37 ............................. TTTTGAAAAATACGGGCATACCAGCGATGCGAACGAC 7415799 29 100.0 38 ............................. TGGTTTGGGCAGCTTCGGAAGACGAAACTGTAATGGCG 7415732 29 100.0 38 ............................. TAGACCAGCAAAATAAAGCGCTACCTCGATGGCCAACC 7415665 29 100.0 37 ............................. TATAGCTCGATGCAGGTTGACTTTACAATTCAGCAGG 7415599 29 96.6 36 ...........................G. TGACGATAATCCTATAGACTTTTGTTCTGCTACAAA 7415534 29 100.0 35 ............................. TAAAGTGTCATGGATGGTCTTAGTATATTATTCGG 7415470 29 100.0 36 ............................. TCGTGACTGAGGAAGCCAGTTAAGTGCATCAACCGG 7415405 29 100.0 37 ............................. TATTGTATCCTTCGGTTGTTCAAGGAGGGGAAAAGAT 7415339 29 100.0 37 ............................. TAAGATCTCCTCCATACTTATTCTGATAGCCGTTTTT 7415273 29 100.0 37 ............................. TCCTCTCCACATGAAACAATTGAACTGGCCGACAAAG 7415207 29 96.6 37 ....................T........ TTGAAAATAATACCGCGGATAGCCAACAGCAGTAAAA 7415141 29 100.0 35 ............................. GTGGTTTATTATTGAAGTCCCCCAATACAGTTCTG 7415077 29 100.0 36 ............................. GAGATCATGTTGAAACCAATAGAACACCATAACCGG 7415012 29 100.0 36 ............................. GTCAGTATAAATATCTACCTTCAGCCTGGAAATCGC 7414947 29 100.0 37 ............................. GAATGAACCGGTTATGCCTGCGATTCCAGGGCAGGGA 7414881 29 100.0 37 ............................. GGTACAAATTAACACTGCCTCAGAAACATTTCATGGT 7414815 29 75.9 0 ...AAA....A...T...A...C...... | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 98.8 37 GTATTGATTGGACCATAGCGGATTTGAAA # Left flank : TAGCTGATATTTACCCAAAAAAAATAAAAATGTATATCATACTGGTATATGACATAGATCAGAAAAGAGTCGGTAAAATGCTCAAACTGTGCCGCCGCTATCTTAACTGGATTCAAAACAGTGTCTTCGAAGGAGAGCTCACCGAAGTAAAACTGAAAGAACTACTCCTTAAGGCCAAAGAAATAATTGATCCCTCTTATGACAGCATCATTATTTTCAGCAGCCGACAGGAAAAATGGCTGGATAAACAAGTCGTCGGACTCGAAAAAAACAACCTCGAAAATATGTTTTAGTCGTCTAAGACACCTAAAATATCATCCATCCATAGCAGTTCTTTGAAAGAAAAAATACAAACTATTGATTTTCAATAGTTTAAAAAAGTCGTCGATGTCAGGGGGTAATCATACTATTACACATCGACGACTTTAGCATCCTGAAACTTTGTGTTTGAATTTTACAACGCCTTGATTACAAGGCTTTTTTTGGTGGGGGAAAGGAGC # Right flank : TGGGAGATAACATTCTCCTTAGGATATAAACATAGAAAGGAATAACTGAACTATTATGTATTGAAAAACAGGAAGATATTTTGGACAAGTATATATCTCTCCGGTAGAGCCATGATGGGTACATCTATGGTGATGGCAACTTGTTTCTGCTGGGCTGTAGAGGTAGTAGTGGGGAGGAAGAAAAGATATTTCATAGAGGAGAAAATAAAAAACTTCCCTAAAAAGAACATTTCGAAAAGTTATTAGAACTATTATCTATTTAATTTCTGTACAGTTATTAATACAAATAACGTCTGCCGCCAGGCTACCCGGAGAATATCTAACTTTAAGTAATGTTCAAATCTCTATGTTATGAAAAAAAACCCACTAAAAAATTATTCCTTGGAAAAATCAAGGTTGTTGATTTAAGTAAATTAATAGGAACTGGTGGTCCAATCCTATATACAGTAGGAACTGTAGATACTTGCGGTAATTTCTCCTGTGATGCAACAGGATGTGCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGATTGGACCATAGCGGATTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //