Array 1 266333-266826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNBO01000039.1 Bacillus safensis strain CFA06 contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 266333 32 100.0 33 ................................ TTTTATTGATAGTTGTCCGTATACTACGGCTTC 266398 32 100.0 33 ................................ TGGAATGTTTCCCATTTCCTCAATGTCTTGGAA 266463 32 100.0 35 ................................ ATGAAATCCTCCCCTATCGTTTTACTCGACCAAAC 266530 32 100.0 34 ................................ AGAAATTTTCTGTGGCGCGCGAATTTTTCCTGTC 266596 32 100.0 34 ................................ AGGTTATATTTTTGAGCGATGTCCAAAAGTTCAC 266662 32 96.9 35 .............C.................. CGTATCCAGATACGCCATTGATAAGGGAAAGGCGC 266729 31 93.8 35 .................-.........T.... AATGATTGTGTGACCGTGCTCAGGTGCTTCTATGT 266795 32 78.1 0 ........T..C.G.....TT........GG. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.1 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTCCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TAGCTTGAAAGAAATGTTGACAGTTGCGCTTAATTTAGGTGTGAAAAACATGACTCTGGCTCAATAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGGACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTGTTTAGAGGTGAAAACAAAATTCTATATAGAAAATTGAAGGCTCTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCGATCAGCTGACAAGGCATCTACAATCGATTCAGGTCGCACTCTACATGAGTGCGTGGATTGAAATCACGCTTTGATGATTCCTGTTAAAACGTCAATAACGTCGCACTCTACATGAGTGTGTGGCTTGAAAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 267161-267395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNBO01000039.1 Bacillus safensis strain CFA06 contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 267161 32 100.0 34 ................................ CGATCAGCTGACAAGGCATCTACAATCGATTCAG 267227 32 100.0 35 ................................ CACGCTTTGATGATTCCTGTTAAAACGTCAATAAC 267294 32 93.8 34 ...................T....C....... ATGCAGTGACCTCCTGAATGTATGATGAATTGTT 267360 32 84.4 0 .......C...T............T..TC... | A,G,CA [267369,267377,267383] ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CGTCGCACTCTATACGAGTGCGTGGATTGAAATCGTATCCAGATACGCCATTGATAAGGGAAAGGCGCGTCGCACTCTATATGAGGCGTGGATTTAAATAATGATTGTGTGACCGTGCTCAGGTGCTTCTATGTGTCGCACTTTACAGGAGTGTTTGGATTGAGGTAGCTTGAAAGAAATGTTGACAGTTGCGCTTAATTTAGGTGTGAAAAACATGACTCTGGCTCAATAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGGACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTGTTTAGAGGTGAAAACAAAATTCTATATAGAAAATTGAAGGCTCTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TGATTGTCTCTTAAACGGGTATGGCCACCTCAAATCCATCTTCTTACAACACCCTCTTTCAGATACAAAATCCATCAGAATATACTGTTCATTTGTATAGTGAAAACATGACTTCTTGCAGTCATGTTTTTTTCTTCTTTTTCCTAAATAAACCTTAAAAAATGTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGACTGACAGGAGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGC # Questionable array : NO Score: 8.59 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 275100-275528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNBO01000039.1 Bacillus safensis strain CFA06 contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 275100 32 96.9 33 ...........T.................... TATTTTTTCAGCCTGTGATACATTTTCCATATG 275165 32 96.9 35 ...........T.................... TATTGGCAAAATCAATAAAAGGCTGAACATCATCG 275232 32 93.8 34 ...........T.......T............ CTACTTGCCTTTGTGTACTTCGGAATCAAATATA 275298 32 100.0 33 ................................ AAATGAGGAAAGATCATAATGATTTTTAAGGAA 275363 32 96.9 35 ................A............... GCTTATTGCGTTGCCCCGATTCCAAATCAGTAAAG 275430 32 100.0 34 ................................ AGAAATCACAGTGAGTGTCTCGTATCTTTCCTGA 275496 32 90.6 0 ...................GA......A.... | T [275525] ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACAGTAAAGGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGGTGAATCAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGTTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCGACCAGAAGAAGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCAGGCTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAATTCTATATAGAAACTTAAGGATTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGCGAAAACATAACTCTGCCTCCTGCGTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGATGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGATAAAGTCGGTGCGAATGTGAGGTGAGCATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGGGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCTCTAAAAAATGTTATAATTAGGGCGGAAATCGGCGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTTGTGGTCATCAATTCTGATAAATGTCTTTGATGTCGCACTCTACATGAGTGCGTGGATTGAAATTTTTTGCTGTCAATTTTATTGTCCACTTGTTGGAGGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTTAACACGTGTTCACTCATACCGTTTCCTCCTGTCGCACT # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 275820-276116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNBO01000039.1 Bacillus safensis strain CFA06 contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 275820 32 100.0 35 ................................ TCTTGTGGTCATCAATTCTGATAAATGTCTTTGAT 275887 32 100.0 35 ................................ TTTTTGCTGTCAATTTTATTGTCCACTTGTTGGAG 275954 32 100.0 34 ................................ CTTTAACACGTGTTCACTCATACCGTTTCCTCCT 276020 32 96.9 33 ....................A........... GGTGAATGGTGGGAAAAGACAAGAAAGCTTGGT 276085 32 68.8 0 ..T......A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 93.1 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATAAATGAGGAAAGATCATAATGATTTTTAAGGAAGTCGCACTCTACATGAATGCGTGGATTGAAATGCTTATTGCGTTGCCCCGATTCCAAATCAGTAAAGGTCGCACTCTACATGAGTGCGTGGATTGAAATAGAAATCACAGTGAGTGTCTCGTATCTTTCCTGAGTCGCACTCTACATGAGTGGATGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCGTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGATGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGATAAAGTCGGTGCGAATGTGAGGTGAGCATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGGGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCTCTAAAAAATGTTATAATTAGGGCGGAAATCGGC # Right flank : TTTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATCTACACAAATGAATAATCAAAGCAATGTAATTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAACGTGTCTAAAATGACGACTTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCGATGCGCCATTGTCTGAACTTCATTGTAG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //