Array 1 645729-645297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012269.1 Pediococcus damnosus strain TMW 2.1532 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 645728 36 100.0 30 .................................... CGGGGTCGCTTCCACATATCCTGTGGTCCA 645662 36 100.0 30 .................................... ACAATCGAACAATCAGGCGTCAAAATGGGT 645596 36 100.0 30 .................................... CCGTTGGTCCGACAACTTCCGCAGCTCTTT 645530 36 100.0 30 .................................... CCGGTCGTCGTCGGTTAAGTACCACTCATG 645464 36 100.0 30 .................................... GTGTGGCGTTGGCTAACGTTTTTGAGGGCA 645398 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 645332 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.8 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : GGCTAAGTGTCTTACGACGCTTGGCTTGTGGCGATACATGATTCTGCTGATGTTCATAGTAAGTTGAGCGTGGAACTGAGAGTACTTTACAGGTTTCTTTGATACTATGGTGCTTCAAATTAATATCAACGGCTGTCTGCCAGTCATCTGGGTTTACTTTTTGGCGAATATGGTTAAGGCTTTTTTTAAGATGTCATTCTCACTTTCTAGCTGTTTCAAACGTTTTTGCAACGCTAAAACATCTGATTTGGAAATTCCACTTCCTTTGTCTTCTTTATATAGATTAATCCATTTGTAAATAGTTACATTTGATACACCATATTCGTCTGTAAGATCAGCTACCGGGGCGCCATCCTGGTACAGCTTGACAATCATTTTTCTAAAATCTACTGAGTACTTTTTCTTGGTCATAAAAACACAATCCTTCCTATTATGGAATTATACTAAATCGTGTCCATGATTTCATACTACCTTCACGGAGCGTTAAAGGCTTGGAGTTA # Right flank : TCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAATC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 647625-646994 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012269.1 Pediococcus damnosus strain TMW 2.1532 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 647624 36 100.0 30 .................................... AGGTATCGTTTGTAATCCTACGAGTGCAAT 647558 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 647492 36 100.0 31 .................................... ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA 647425 36 100.0 30 .................................... CACTGATTAGTTTGGTCTCACAATCCAAGC 647359 36 100.0 30 .................................... ACGCAAGACCAAATTGATTCTGGCCCAGCA 647293 36 100.0 30 .................................... ATGGACGTTCATGTATGGCTCATTCTCAAA 647227 36 100.0 30 .................................... GCCCGTTTGGGTTTGGCCTTGAACATAATC 647161 36 100.0 30 .................................... TGTATTACAGGGTTTACATTGCCTACGCGG 647095 36 97.2 30 ................................A... TTCACCTACAATTAATGTATTACCCTTTAA 647029 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.7 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : AGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : TAATAACGGTGGATTTAGGTCAAGAATCTGGACACATTTTATGTATAATTTAAGCGACTAATTTTTCCTTTTCATTTGGAGTTAAATAATCAATGCTACTGTGAATTCGAGAACTGTTATAAAAGCTCTCAATGTAGCTGAATATTGCAGCATTTGCTTCTTCAAAATCCTGATAATGGTGTTGGTAAACCTCTTCTTTTTTCAAACTGGCGTGAAATGATTCCAAACATGAATTGTCATAGGGACAGCCACGCTTGCTATAAGAATGGCGAATATGGTGTTGCGCTAAGATCTGTTCAAAGCCAGCACTGCGGTACTGGCTACCCAGATCGGTATGCACAATTAAGTTATTAGTCGTCTTTCTAGTTTCAAAGGCTTGTTGAAAAGTGCTGATCACAAGATCAGCAGTCATATGACGGCTGATTTTATGGGCAATGATTTTACGTGAATATAAATCCTGAATGCTTGATAAATAACACCAGCCATTGGCTTTGGTGTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //