Array 1 17595-16967 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJLS01000008.1 Streptococcus dysgalactiae strain SDES6006 DEFGBEHL_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 17594 32 100.0 35 ................................ TTTAAAAAATGGGAAATCCTCTTTTGTTTTAGCGT 17527 32 100.0 33 ................................ AGCGTTACTATGGGAATGTCAAAAGGTTATTGC 17462 32 100.0 35 ................................ TCACGGTGTCGCTAGCAAAATTAAACAAGTTAAAC 17395 32 100.0 35 ................................ AATAACAGTGGAGCTATGATCCTTAATCATGCACC 17328 32 100.0 34 ................................ GACTGTTGGCTCTTTTTTATTTTTGTCATCGTTA 17262 32 100.0 33 ................................ CTCTTGATATGGTTAATAGCGTCTCATACTCTA 17197 32 100.0 35 ................................ TCATGATTATGAGTTAATTGTAGCGCAATTAAACA 17130 32 100.0 34 ................................ TGAGGGAAGCGGAATGAAGAAACCAAATCGTTAC 17064 32 100.0 34 ................................ GATGACGATAATTACGAAGTTATTGAGGTGACGG 16998 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ =================================== ================== 10 32 99.1 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTGTCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACATCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 483-1046 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJLS01000014.1 Streptococcus dysgalactiae strain SDES6006 DEFGBEHL_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 483 36 100.0 30 .................................... CTCGACGAATTGACAAACGAAATAAACAAA 549 36 100.0 30 .................................... GGGATAATTTTGCGAAGCAAAATTCACATA 615 36 100.0 30 .................................... AGGTTGCTTCGGAAATTATTGAGAAGTTCT 681 36 100.0 30 .................................... TGGATACGAAGGTGGTGTGCAAGTTACTCT 747 36 100.0 30 .................................... TTGATGGGATGTCATCAACCTTGATAGCTT 813 36 100.0 30 .................................... CATTGAGCAACATTCTCAAAGTCTTGTATG 879 36 100.0 30 .................................... ACCGACATCAATGCCGGTAGCAAAAAATTA 945 36 100.0 30 .................................... ATTGTAGATATCCCATTCATCTCTTGTAAT 1011 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.4 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : GCTTGGTAGTAGTAACTTGAGCGTGGGATGTTCAGCCAGCGACACATAGCTGAAATGCTGTATTTATCCTTGTTTGCAGTGATTACTTGTCTTTTCGTGCCATAATCACTGCCGCTTGCTTTAGGATATCTAATTGCATTTCGAGTTCTTTATTGCGTTTTCTGAGTTGAATCAGTTCCCGTTGTTCATCTGTCATATTATCAACAGACTTGAAGGAACCCGTTAGTTTGGCTTGTCTGACCCACTTATCGAAGGTTGAGGGCGTTAACTCATATTCTTTGATAAGCTCACTTCGTTTCATTCCAGCATTGTGGAGGTCAACAATTTGTTGCTTAAAATCATCGGTGAAGTGGCGACGTATTTTTCTAGACATATCTGTTCTCCTGTTTTCTTTAGTGTAGAACACTTTATAAATTCTGTCTAGTTTAGTGTAACCGATTCAGGTCCCAAAACTAGATATTATATTGTTTGTCTTCAATCTCG # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 37734-38429 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJLS01000017.1 Streptococcus dysgalactiae strain SDES6006 DEFGBEHL_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37734 36 100.0 30 .................................... TATGCAATCAACAGGACTTTTTGATAAAAA 37800 36 100.0 30 .................................... CCAAAAAGGATTCAAAGCAGCAGAAGTCAA 37866 36 100.0 30 .................................... ATTTAAAATCTGTATAAGTTGACTGTTTGT 37932 36 100.0 30 .................................... GTTTAAATTAACCAACTTATCTCGTTCTAG 37998 36 100.0 30 .................................... TCTTGGGTTATGGAAAACATGACACAAGAA 38064 36 100.0 30 .................................... TAGTGTTAGGTGGAAAATCAAGAAAACTCT 38130 36 100.0 30 .................................... TAAGTATTCACGAATTTCTTTGACTGTAAC 38196 36 100.0 30 .................................... TGGTTTATTACAAAATAAAAACTCCCAAGT 38262 36 100.0 30 .................................... TACATGACCTCGGTTCGAGCTAACCTGAAC 38328 36 100.0 30 .................................... AAAGTTACAAGAACCACAACGTGTTTCAAT 38394 36 86.1 0 ............................GAA..GG. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.7 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTAAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AACACTTTTCTGAACAATTTTTATAAAGTGCTTTTTAAGCGATAATTCGTTTGGTCATGGGAGTTTGGTAGTTAAGACTACCATGAATGCGATGATAGTTCCACCAGTGGACATAATCTTTCGTTTTGAGGGCTAATTCTTCTAGTGATTGAAAGGTTTCTTGGTTGATAAACTCCAGTTTGAAGGAACGATAGGTACTCTCAGCGACGGCATTGTCATAGGGACAACCAGCCTGACTGAGAGAACGGGTGATTCCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //