Array 1 81351-81684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKRE010000012.1 Chromobacterium violaceum strain CGB6 NODE_12_length_137562_cov_74.159019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81351 29 100.0 32 ............................. GCGATCCCCTGCCGAGAGGCGGGCAAGATCGA 81412 29 100.0 32 ............................. CATAGGAACCCATCCATTCCGCTAGCGCGCCG 81473 29 100.0 32 ............................. ACCAACCCATCTGGGTCGGGTTATGTCTTTGG 81534 29 100.0 32 ............................. GGCCAGGGTACATATTGTCCCGCTTTCACGGC 81595 29 93.1 32 .........................G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 81656 29 69.0 0 A.A.........GTT..........TTGA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : GCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGGTTTTGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTAGGCTATGGCTGCTAGGCCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGAACCCTTGTGCAAGGGACGATTGGCCCAGGCCTGGCCGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGGCTGGTAAAATCGGTAGAATTTTAGATCGGGTTTTTGTCTTTAAAAATCAGCAGCTTGAAAATGGT # Right flank : ACGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAAAAAAAAAAGCGCCCCGTGGGGCGCTTTTTTTTTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88959-89536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKRE010000012.1 Chromobacterium violaceum strain CGB6 NODE_12_length_137562_cov_74.159019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88959 29 93.1 32 A.............T.............. CATGTAAAGGGTCATGTGACATCAACCCACTC 89020 29 96.6 32 ..............T.............. GCTGCGATCCGCTCCTCGGCAGTCGCGCTGTC 89081 29 100.0 32 ............................. CCGCTACTCAGTATCAAAGAGGTTCTAGAAGA 89142 29 96.6 32 ............................C AGGTCGATATCCTGACTGATAAACGCCTTCAG 89203 29 100.0 32 ............................. GGCAGCCGATGAATACGGCGGAAAACCTTGAG 89264 29 96.6 32 ............................A AGTAATTCCTTGTTGCGATTGTGTTGCGTTGG 89325 29 100.0 32 ............................. GCATGGGCCGAAAATACGCGCATATCGCAGCA 89386 29 100.0 32 ............................. ACACGTCCCAGCGGCCAACGTGTGCGCGCGAC 89447 29 93.1 32 ...........A..T.............. GTTCACAAGAAAAGCATCGAGGACGACAAGAC 89508 29 82.8 0 ....................A...TG.TC | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGGCTTACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGACAAGTAAGCGGCGGCGATAATGCTGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATCGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTCAGGGTGGGTTTTTATCTTTAGAAATCAGTATCTTGAGATTGGT # Right flank : CCTGCCCGTATATCGCTTGCTTAATCCGCGGCCGTCGCGCTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGTTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTTGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //