Array 1 51797-53838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEA010000033.1 Salmonella enterica isolate 3970_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51797 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 51858 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 51919 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 51980 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 52041 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 52102 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 52163 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 52224 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 52285 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 52346 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 52407 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 52468 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 52529 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 52590 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 52651 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 52712 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 52773 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 52834 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 52895 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 52956 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 53017 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 53078 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 53139 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 53200 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 53261 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 53323 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 53384 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 53445 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 53506 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 53567 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 53628 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 53689 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 53750 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 53811 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69971-71141 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEA010000033.1 Salmonella enterica isolate 3970_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 69971 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 70032 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 70093 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 70154 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 70215 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 70276 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 70337 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 70398 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 70460 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 70563 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 70624 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 70685 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 70746 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 70807 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 70868 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 70929 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 70990 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 71051 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 71112 29 96.6 0 A............................ | A [71138] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //