Array 1 8080-13833 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJU01000179.1 Xanthomonas oryzae pv. oryzae strain GX56 scaffold178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8080 31 100.0 34 ............................... CACCGATCTTACCCTCCACAAACCTGGCATTAAT 8145 31 100.0 36 ............................... ATATCAGAATAACCCCGGCGTTATAAATGGTGTGAA 8212 31 100.0 36 ............................... TGTTGCTGTGGGAGAGACCGCATGAGCGAGAAAACC 8279 31 100.0 35 ............................... CGCCGACAGATTGCCAACAGTGGCAAACAGCTCGT 8345 31 100.0 33 ............................... CTTACAGACGACCAGTATGACAGCTTTGCCAAG 8409 31 100.0 35 ............................... CAGCTCTTGCCCGAGAGTTCGAACACCAGCTGAAC 8475 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 8543 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 8608 31 100.0 34 ............................... CTTGACCTTCAAACCACGGATCAGGCGGTTGTTC 8673 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 8738 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 8803 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 8868 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 8932 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 8998 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 9065 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 9130 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 9198 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 9264 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 9330 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 9394 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 9459 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 9526 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 9592 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 9658 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 9726 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 9792 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 9857 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 9922 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 9988 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 10054 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 10119 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 10185 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 10251 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 10316 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 10382 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 10448 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 10515 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 10581 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 10646 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 10712 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 10779 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 10846 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 10910 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 10974 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 11039 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 11105 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 11170 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 11237 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 11303 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 11370 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 11436 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 11500 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 11565 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 11630 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 11697 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 11763 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 11829 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 11896 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 11960 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 12026 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 12091 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 12157 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 12222 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 12289 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 12354 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 12421 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 12487 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 12554 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 12620 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 12687 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 12755 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 12820 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 12885 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 12950 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 13015 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 13081 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 13147 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 13212 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 13277 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 13343 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 13409 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 13473 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 13540 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 13606 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 13671 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 13738 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 13803 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 88 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //