Array 1 126618-127727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPL010000005.1 Pseudomonas cichorii strain LCYJ18 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 126618 28 100.0 32 ............................ ATAATAGATCCACATACGGACGGTATCGAACA 126678 28 100.0 32 ............................ CATAAAATAGTCAGTTGTTTTTACATCGTTGC 126738 28 100.0 33 ............................ ACGCTCGTACCTGCTGATGGTCATTTTTTCGCA 126799 28 100.0 32 ............................ TACTCACTAGAGATGTCAGAGTCCAAGGTGAA 126859 28 100.0 32 ............................ GTATGTTGTGGGGGGCTTGGACGTGGCGACCG 126919 28 100.0 33 ............................ GTTGATGGTCAGAATCTCACTGTAGTGATGGCT 126980 28 100.0 32 ............................ TCGGCGTGCACGGGCCTCAGTGTTCAGGAAGC 127040 28 100.0 32 ............................ ATCGTCCTTGTCATGTAAGCCGGAGGTGTTCG 127100 28 100.0 32 ............................ CCATCGCGGCGCTCTACCTCCCACTTACCTTC 127160 28 100.0 32 ............................ TATGCGCCGTGCAATGGTATCGGCCAAGGTAT 127220 28 100.0 32 ............................ TGGGGCTGGCGTCTGGACCAGGGGGAGCGACA 127280 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 127340 28 100.0 32 ............................ AGCGAGCAATGCAGCGGTGTAAGCAGGCGAAT 127400 28 100.0 32 ............................ ACTCCGGCCTTGTGATGTTGCGCACCAGAAAC 127460 28 100.0 32 ............................ ATCATGGCGTCAGACATAAAAACGCCCGCCTC 127520 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 127580 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 127639 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [127665] 127699 28 89.3 0 ........T......A........A... | A [127711] ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCCGACTGATTGGGTGGGATTTATCCGCGAGACGTCATTTCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCACACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AAACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCCTCCGTTAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCATGCAAGCGCAGGAGGTTGCCCAGGCCGGTAGCCCTGTCGCTGATAGCGGGGAAGCTGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 137332-136405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPL010000005.1 Pseudomonas cichorii strain LCYJ18 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 137331 28 100.0 32 ............................ AGGTACTGGTTCCAGATCTACAGTGTCAGAAT 137271 28 100.0 32 ............................ CCAGCCATCGATCACAGCCACGGCATCAGGAT 137211 28 100.0 31 ............................ TTGATAGCAAACCCACCATGACACCAGACGA 137152 28 100.0 32 ............................ GGCAATCTTTCAGCGCCGGGTTGATCGGTTGC 137092 28 100.0 32 ............................ ATCTCGCCAGCCATTTTAAGCTCGTACAGGTA 137032 28 100.0 32 ............................ ACCACACTGTTTCTCCAGCCGTTCGATCTCCG 136972 28 100.0 32 ............................ TTTAGCGCAACAGCCTGGCTCGCTTCGCTTAC 136912 28 100.0 32 ............................ TACCGTTGGTTGCTGAGCTAGCCGCAGGAGTC 136852 28 100.0 32 ............................ GGCCCAAGGCCCGCGAGGTCTGGGCTGCCGAC 136792 28 100.0 32 ............................ TCAGTATCCCGAACGCAATATTCACCGAGGCG 136732 28 100.0 32 ............................ TTGACCGGCGGCTACGGCTCGACCTTGACCGG 136672 28 100.0 32 ............................ ACATTGAGGAGAATGCTGTTAGGGACGCCATA 136612 28 100.0 32 ............................ AATGACAACGACTTCGACATCGTCCTGCAGGT 136552 28 96.4 32 ............C............... ATATCGCCATCTTCCCAGTAATAGAAATCCAC 136492 28 82.1 32 ...........CAA..A.....C..... TACGACACGGTCATTAATGGTCATCTGCTCTC 136432 28 75.0 0 A..A.......AAC........C.C... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 97.1 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCGATAGTGAAAAAAAGAGGGTCAAGAAAGGGTTCACTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATTTTTTGATAAATCATTTTGTACAAGGCAGCTTGCTGGCGACTTCAATGTACAGCCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTGTTGTGTATACCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAACGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCGTGCCCGTATCTACAGCGAGCAATAGATGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTCTTTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGCGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : CAATCAAATCCACCCCCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAATCACGCCTGCCCACAACAACCATTCTGTAATCCCTTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 137939-138327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPL010000005.1 Pseudomonas cichorii strain LCYJ18 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 137939 28 100.0 32 ............................ ACCAGCGAATCGATGCCGAGATTTGCCCAGAT 137999 28 100.0 32 ............................ CAGATCGAGGGAGCGAGTTTGCGAAGGTCGTG 138059 28 100.0 32 ............................ TACGGCTCGACTTTGACCGGCGGCGATAAGTC 138119 28 100.0 32 ............................ TATCGGAAATTGACCGTTCTGCCTGCGCATCC 138179 28 100.0 32 ............................ ACAGCCTCTTTGAAGCGGAAGTGGCCTAAATG 138239 28 100.0 32 ............................ AGTCCGGGCAGTTGGCTTTGAGGAATGCGTTC 138299 28 89.3 0 ...........CA..A............ | G [138325] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CATATTGGGTGAAAAAAAGAGGGTCAGAATCAGCATTCCGGAAAATGTTTTTGTGCATCTATTGCTCGCTGTAGATACGGGCACGCATTGTCGCGGGCAAGCCCCCTCCCACTGGTGGTACATCCGAGTCGGTTGAGCACCGTCTTCGTTACTGAAGTCGCTACGGAGTAATGCCGATCAGTTAAGGTATACACAACACTTGTGGGAGGCAGCTTGCTGGCGAAAAATCTGAAAAGCGGCAGATATTCTGCGGCTGTACATTGAAGTCGCCAGCAAGCTGCCTTGTACAAAATGATTTATCAAAAAATACGGCGCTGTCGCACTCCCCGGGAATATCTGTCTACGGTGGCCAAGAGTGAACCCTTTCTTGACCCTCTTTTTTTCACTATCGGTTCGTCTTTTAAAAATCAATGATTTACAGATATCGATAAAAAAAGGGGTAAACGGCTGCTGGTGCATATTTTTCTTTGAGAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : AGCTTCACCGCCATAGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCAATAGATATCCATCGCCTGAAGCACCGTCTTCGCGACTGAAGTCCCACACAAGCCAACTCATTCGCGAAAGGCCTTGAAGGCATCCTGCACAAACCTTCTAGACTTCCCATTCCCCATGCGCGATAACACGCTTCTCTATCCCTTGTTTGCCCATAAGCCCGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCTCATGCCTATGATCCTCACTGGCACGACAGTTATCTGGTGGGTGTGACGGAGCAGGGGGTTCAGCAGTTTCATTGCCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGTGAGATTCATGATGGGGATGCGCCCAGCGCCGAGGGTTTCACTTATCGAACGCTGTACCTCGACCCGCACTGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 165217-164709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPL010000005.1 Pseudomonas cichorii strain LCYJ18 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 165216 28 96.4 32 .................T.......... TCGGTCATGATCCCCGAAGCGACGTAGTTGAT 165156 28 96.4 32 .................T.......... AAGCGCTTGGGGACCGCATTCAAGGCCATGGC 165096 28 96.4 32 .................T.......... GCCGCAAGCTCGCCGCGCTGGCCAGCCTCTTC 165036 28 96.4 32 .................T.......... CGGATGCGCTGACAGAAACCCTTGAACTCATC 164976 28 100.0 32 ............................ CGCAGATTCAACGCCCTACCCGTTCAGCGAGC 164916 28 100.0 32 ............................ CACCAGCGGCGGTCCTGGTCTTCAAGGGGTAT 164856 28 100.0 32 ............................ TGCTGGCCGGTAAGCATGCTCGGGCGTGTGAG 164796 28 100.0 32 ............................ ATCTTGAAAGTCCATGCCGAATGTGTCGTCGG 164736 28 71.4 0 ...........CA.......T.C.ATTC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 95.2 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTATCCGGCCTGATTGCCGGGCCTGCGAATTCATTCGCGAGGCGGTGTTCCAGACAATACATATCCTTTGAATGTACCGGCCTATCGCGACTGAAGTCGCTCCTACAGGTCCGGCGCCAAACCACGCCTTAACGCACCCTCTTTTCGACCCTCTTTTTTCAGACTCCGTCGCCCCCCCTTTAAAATCAATAACTTACGAAAACCACAAAAAAGAGGGTAAAACGGCCTCAGGTAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA # Right flank : CACTTCACAACTTTCAAATCCTACGTTCAGCCCACACTCGACCTACAACCACTTGCTCCTGATTACCCTACCCAAGCTGAACTTCCTCATTTAACCAACCCGGCCCTCAGACTACGCTTCCTGCCGTTCGCTACCAATTCAGCGACCGGGTTTGGCGACCCGACAAAGCTAAATCTCTCCCCATCGTGATGCCGGCGCGTTATCCTGTCGGCTCATCGCGTTATGGCGGTTGTGTGCGGGGGGCCTTCGGGCCTGCCGGGCTTGGAGATGGCTACCGGTTCGCCAACCCACACACAACTGCCACCCATTGTTTGGCGACAATTCGGGCAGTTCCATCAGCCATATCCGATGAATGAAAACCATGCAAAATTTCAGCAACAACCTTCCCTGCACATCCTCCTTCCAAGCCACCCTCTTCCTGCGCCACAGCCGCATGCTCCGCGCCATCTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCTCGCCTGATGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //