Array 1 241709-240618 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLN01000001.1 Campylobacter sp. RM8966 RM8966contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 241708 36 100.0 30 .................................... TCCATGCTCTCAGTATATTTATTAGCTGGA 241642 36 100.0 31 .................................... GCCGGTCTCTCGCACTTACCACATTTGCAGT 241575 36 100.0 29 .................................... TCCATGCTGCTCTCAGTATATTTATTAGC 241510 36 100.0 31 .................................... CTACAATAGATGAGCTAAAAAAGCTATTTTG 241443 36 100.0 31 .................................... CTAAAAAATACCATTTAAGCATATTCCCACC 241376 36 100.0 30 .................................... TATAATAGTTGCGATAAAAGTGATGATTTA 241310 36 100.0 30 .................................... TTTTGTAATGCGATTATTGATGGTATGTCA 241244 36 100.0 30 .................................... TTAAAGTTCTACAAATATCAGCTAAACAAA 241178 36 100.0 30 .................................... AAAAATATCACAGTAGTATTTGATAGCAAA 241112 36 100.0 30 .................................... AACTTCACTACTACTGCACTACTTTTATAT 241046 36 100.0 29 .................................... GATTTATTTGAGCCAGTTAGCGATTTAGA 240981 36 100.0 31 .................................... TTAATTCCCCTAAAGTTTAAAACTTTAGTCT 240914 36 100.0 30 .................................... TATAAACAGCCTTTAATTGTTACGCTTAGG 240848 36 100.0 29 .................................... TTTACCACGCACTTCACCAACTACAAAAA 240783 36 100.0 29 .................................... TTTACTTAGTGCGTATTTAATCGCTTTTG 240718 36 100.0 29 .................................... GGGGTGGGACGATATTACAGCCACTTATG 240653 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 100.0 30 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Left flank : GCGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAGTTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAATAAGATAAAGTCTAAATTGCCTAGCAAAGGAAATGTGCGAATGATTACGATCACTGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCAAACCAAAAAACTCTACAGAGAAACTAAGCCTAGAAAAAAGCTTATTTGAATTTTAATATTTTGCCAGGATAGACCTGGCAAATGGTTACGATCTAAAAAGATCTTATTATAAGAATACCCTTAGTTTTTATATGTTATAAGATTTGAATTATACAGTTTATTGATTTAAAATTTGATTAAGAAATCAAAATTTAGATCAAAATACCATAAAATCATATCTATAAGAAGTTTCT # Right flank : ACATTTGCAAGTATTATGTTATCAAAGGGGATTATAACATATATAAACTAAGGTTTTTTATGATTAAAATTCAAATATGGAACACAACTTGCTTAATGCTTATAAAATTAACGCAGGAGCAACAATGCAAAACGGATATTATCAAGCGACTGGTGCGATGGTGACGCAGTTTAACCGCTTAGATATCATCACCAATAATCTTGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTAGTAATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAAGATACTTTGCCATTAGAAAATCACACTAAAGATGCTGCTAAATTTCTAAATAGAACACTAAATAGGGTTCCTCATATCAATGAAGTTTATACCGATTTTGGAGTAGGAGGCTTAAAGCATACCAATAATCCTTTAGATGTAGCTATTGGCAAAAACGATATATTTTTAGTAGTAGATACTCCAGCTGGTGTGAGACTAACTAAAAACGGCTCTTTAAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 100927-100318 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLN01000003.1 Campylobacter sp. RM8966 RM8966contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 100926 37 100.0 34 ..................................... AACTAATTATATAAAAAAGGAAGTTAGATTAAAA 100855 37 100.0 37 ..................................... TAAGAGCTAAATTGGCTAAAAACGCATTTAATTCTAG 100781 37 100.0 35 ..................................... TTATCTACTAGACTTTTTAATTCTTCTTTTGTTTT 100709 37 100.0 35 ..................................... TTTTGCTCCATCATTGCGTACTAAAGCCCATTTAT 100637 37 100.0 35 ..................................... ACAAAGCACAGACCAACAGTTGATGAGCTCAAAAA 100565 37 100.0 32 ..................................... CCAGTGAAAACTATGCAACTCCCCACTGTCTT 100496 37 97.3 32 ...........................A......... CCAGTGAAAACTATGCAACTCCCCACTGTCTT 100427 37 100.0 36 ..................................... TTAGTTCTTTTTGAGTAGCTTTATTAAAATTATAGT 100354 37 91.9 0 A...............................C...C | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 98.8 35 GTTACAAACAATATGACCCGATTTAGGGGATTGAAAT # Left flank : ATGAATTTATCAAAACCCAAAGGCTATGATAGGTTAAAAAAAAGAGAAAAATCCATAAATTTAAGCCATAGCGAGTATGAGAGTCTATGTGTGTCATATCGCAACATCATACAAATAGATAAGATAAATCAACTATATAAAAAATTAGATAAATTAAGAAACAACCTAGCTCACGCCAACTCAGGCGACTCTATTGCAAATGCCAAATCAAATATCAAAAACCACCAAAATAGCTATAAGCAGTTGATTTTAAAGACTTAAAGCCATCAAAAGATCTAAATTTATGCGAATTTGTGGAAATTTTCAGCCAAAATTTGGTTATTTATATATAAAATATTGCTTTAATTTGAATTTGCTTATTTTGATTTATATGGTAGATTCAATGTTTTTTAACTTTTTATTCTATATTTTGATTGTGTGAAAATTTCAAAGTGTGGTTTTATGGCTATTTATTGATTTGTATAATTGATTATATAGACTCAAATGATGAATTTGTGTCT # Right flank : TCATATTAATCACTATGCGATATAATAAATAAAGGAGTAAATTATGATATTTATATTCAAATTACTATTTTTTTATTGTTACTAGTAGCTATTTTAAATACAATTTTTATGATAGATATAGATTTAGCACAATATATAGCTATATGCTTGATGGTTTTTTATTACTTTTTTATTATCTTTTTTGCTATTTATACCAAAAAGAGTTAAAAAGAGCCAAGCAAGATAAGATAAAAAAGCATATGATTACTCAAAAATAGCAATCTAATTGCTATTTATCCTTAGTGCTATCTCGTAAATAATATAAGCCAATTTAAAAGATTAAAACTATTCTAAGAAGTTTTATATTAGTTTATTAATATGATAAGTATTAGAGCCTTATTTGGCTCTAAGGTTATTTAGCATCCCATGCTAAGACTGTATTGCCAAAAGCATCACTTAAAACATCACCCATACCCATGATATTATATCCAGCATCTACATAATGCACTTCACCAGTTACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAACAATATGACCCGATTTAGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 114480-116832 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLN01000003.1 Campylobacter sp. RM8966 RM8966contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 114480 37 100.0 35 ..................................... AAGAACTTACCCTAATATGTATTTTGTTCCAGCTA 114552 37 100.0 35 ..................................... TTCAAGCTCCAGTCTGATTTCGCATTTACCCTATA 114624 37 100.0 33 ..................................... TTGCCAATTGTGATTTATACTTTGGCTTATAGA 114694 37 100.0 34 ..................................... TAAAAATGAGACTTTAGGTTATGCATTAATAGAT 114765 37 100.0 34 ..................................... CTTTATGATTTAATCGTGGCTTTAATCGCTACTG 114836 37 100.0 37 ..................................... ATTGACTTTGTAAGTCCAGCCATAACAGCATAATGAG 114910 37 100.0 38 ..................................... CACGGGTTTAGACAAGAGAAAACAGCTAATAAAGCTCA 114985 37 100.0 36 ..................................... TAATACCGATTTATTGATATCTGTGCTAAGTTGCTT 115058 37 100.0 34 ..................................... TTAGCACCCGAAGTAGAGTCAATCTCACCATCAA 115129 37 100.0 34 ..................................... TGTAGCTGTTTTGGCTATGTAGCTGAAAAAATTG 115200 37 100.0 34 ..................................... AAATATTTTTTAGCTTCCGCCCACGCACTTTCAA 115271 37 100.0 34 ..................................... TCAAGGGATTATCTTTAAAATCTACCCTATTTAA 115342 37 100.0 35 ..................................... TCAAGACCATTTTTTAGAAATGCAATAGAAAATAA 115414 37 100.0 37 ..................................... GCAAATAAAATCTGACTGCCATTATGTTTGAAAACAA 115488 37 100.0 37 ..................................... TTATACCAACCACTAAATGAGCCTATACTGCTTGGGG 115562 37 100.0 38 ..................................... GCTATAAAATTCATCGTGGTTAAAATCTAATTTTTTGC 115637 37 100.0 38 ..................................... TTTTGCCTAAGCTCGGCAAGTGGTAGCCTTTTTGCTTG 115712 37 100.0 35 ..................................... ATTTCTTGCAATAGCCCTAAGTGTTTTTTAATTGC 115784 37 100.0 35 ..................................... GTCGGAATGTTTGAAGTAATCGCAGGCCGTTCAAT 115856 37 100.0 35 ..................................... GTCGGAATGTTTGAAGTAATCGCAGGCCGTTCAAT 115928 37 100.0 37 ..................................... TTAAATCGCCCTTGCTCGTCTATCTCTTCACCTGTAT 116002 37 100.0 38 ..................................... TGGGGTGTGCTCTCATCGATATTTATATCGCCAAAAAT 116077 37 100.0 35 ..................................... TAATAGTGTTGATTTTAAAGACTTTACGCATATAT 116149 37 100.0 35 ..................................... ATAAAGTTTTAAAATCCATTGAACACTCACAACTT 116221 37 100.0 34 ..................................... CTCTGACTAATTTCCAACTTCACATCAGTCGCAA 116292 37 100.0 33 ..................................... ACTTGATTAAAGTTGATATTCATACCAGCTAAA 116362 37 100.0 35 ..................................... TGGTGGTAAAAAATGAAGATGTAATCACAACTTAC 116434 37 100.0 34 ..................................... TGCACATTATATTATTATATTGCAAAAGGCTTAT 116505 37 100.0 37 ..................................... ACTTTATAATTTTTATTATAGACTACATTTAATCGCA 116579 37 100.0 36 ..................................... TTTATGGGCGAGTGAGCTAATTTTATTCAAGAGCAA 116652 37 100.0 36 ..................................... CTTCAATAGCAAAACTTCTTGAGAGTTTAAAAGAGA 116725 37 100.0 34 ..................................... AGATGAAGTAAAGCTGTTATTGGAAAATTCTGAT 116796 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ====================================== ================== 33 37 99.9 35 GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Left flank : AAATCAAACCAAGCCAATACTAAATAAAGGGACTAAAATGCAACTTATAGCCTACTCAAAACTAGCAAGCAAACATTTTAATAAGCCATTTTCTAAGATAATGCTAATTTGCGGTAATAATCTTAAATTCAAAATATTTAATGTAAAAAGCGATGATTTAGCTCAATTTGACAATATAATAGGTAAGATTGATAAAATGCTAAATCAAGAGCTATTTCCACAAAGTTGCGCTAGTATAGCTGCTTGTATGCAGTGTGAATTTAAAAATTATTGCGATGATAGAGAATGATACCGGGGGTGCCAAAGGCAGTTGCCCCGATCTGTTAACACCTTTAGGTGATTTCAAACGCTAAAGAGTTAATCTGTAGTATAATTTGCATTTGTATTATAACTAAATTTTTCCACAAATTCGCTATTTTTAGCATTTTTTTTCAAAGTGGAAAAATTAATACCTCTAAACCATAGCCAAATACCCATAAAATAGGCCAAATTTGGCTCAG # Right flank : ACAAATCTAACATCTAATCAAATTTAATATAATCTACTATTATATTAAATTTATTATCAAAATAGATTAGCTAGTTAAAGATATAATTTTATAAATTTTATTTTTGCAATAATATTAAAATCCCTCAAGAAGGATAAAATATAGCTCTTTAATCTGCGAATCACTCAAATGAGCAGTCGAAAAAGTGCTAAGAAATCGAACAATGCTATCTTTATTTAATGCATTTTTGCCGATACAAGCAGGATGAGCGATCAAAAACGCCCTACCTACACCAATCTCATCACCTAGCTTTCCATCGCAAATAAAACAACTCATATCTAAATGCAATCGCCCTTCAAACTGCAAAATCATAGCATAAGCCTCAAGCACGACTCTAATAGGATTTTGGCGGTGAAATTTTTTCGCACAATTTTCTAATAAGTTATAATAAAACTCATCGCTATCTTCTACATCTCGCAAATGATCAGCTAAAAGACGCATAAAATTTTGCCAAATTAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //