Array 1 1461180-1461480 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVLY01000001.1 Roseobacter sp. HKCCD8499 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1461180 36 100.0 30 .................................... CGCGCCTTTTGGCAAGGGCGGCTTCGACGC 1461246 36 100.0 31 .................................... CCGATCTCTTCAACCGGATGTCCGGCCAGGA 1461313 36 100.0 30 .................................... CCATAACAAGCTGCGCCCCTATCCGGGCGA 1461379 36 100.0 30 .................................... ACTCTGGCCAATCTTCTGGCCTCCAGCCGT 1461445 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTGCGGCTGGACCTCGAATTCTGAATGGCTAAACT # Left flank : TATCGGGCGCGAGCGCGGCGATCAAATGATCGTTGGGGTTTGGTGGCTCGCCGATGAACGTACCCTTGCCCTGACGTCGCCAAACCAGCCCTTCGACCTCCAACGCATCTAGTGCCCGGCGCACGGCCCGGCGGCTGACATTGAAGCGCCCAGATAGCTCCCGTTCTGTCGGAAGTTTTCCGTCTTTCTCGACCGCGCCACGACGGATCAACTCGCGAATCTTGGCGCGAGCGAGCGACGCGTTGTCTTGCATGATCTGAGCTGTATCGCGCACGGCTTTCTCCAGAACCGGGACCAAAGTGGATTTGGTCCGAACCAATTTTACTTTGGTTCGCGTGCCGCAAAGTTGTCAAGCGATTCCCATCCCGGGGCTAAGCCGGGCCGTAGATCGGCGACGATGGCGGTGGGCCGAAGGGGCGAGAGACGGGATGTCGACTAGCTGTTCGGCATCCGAGTCTGTGCGTCCGGTTGCTGGGCCATGCGAGGGGATGCAGGCAACG # Right flank : TCGATCGCCGTGTATCTTCTTGTTTTTACAAGAGGATACACGGTTTGTTGTTACGCAAATCCGCTCAATTATCTTCAAAACATCACCAATTGCTCTGGATTCTTGCGCGCCGCGCGTCGCCCTTGATCTGAGAAATGAATGATATCTCGATACTGACGATCCGTGAAATTGAGGATCTGAATGTCGCCCATCGCAGGGAGGTTCCGTTCGATACGGGTCACCCGGGTCTGAAACGCCTCCTTGCCATTCACAAACCGGGCATAGACCGAAAACTGGCTCCGCTCGAAGCCCCCGTCGAGCAGGAAGTTGCGGAAATCCGTGGCCGCTTTGCGCTGCGGCTTGGTGTCGGTGGGCAGGTCGAACATCACAAGTATCCACATGAGGCGGTATCCTGAAAGAATGGCGGGCTGAAAGGTCATGCACCCAACCCCGCGAGCGTCAGGGTATCGGGCGGTCGCGGCAGGGCGAGAGAGAGCTTGCCGGTCTCGAAGCTTTGCCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCTCGAATTCTGAATGGCTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 20493-20858 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVLY01000007.1 Roseobacter sp. HKCCD8499 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20493 36 100.0 30 .................................... CAGCTCTATCAGTGCATCAGCTTTGGTCAT 20559 36 100.0 30 .................................... CGCAGCCAATACCGGATGGTTCGGGCGCTG 20625 36 100.0 30 .................................... TCGTCGTTGGACCATCCGCAAAAGTAATAG 20691 36 97.2 30 ......C............................. GCGACCGCATCCTGCCCGTAATACTTGTTC 20757 36 97.2 30 ......C............................. TGTCGGCCCCTGTCTTACTAGGCGACAGAC 20823 36 97.2 0 .................C.................. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 AGTTTAGTCATTCAGAATTCGAGGTCCAGCCGCAAC # Left flank : ATGTATACACCCGGAACGGCAATCCGATGATCATCGACGTGCCTGACGAGCCCGGCGCCTATGTGCTGCGCTACTTCCTCGGGCAAGATCGGGTCGTGATCGCCGAACACCCGCTCGTCGTGCAGTAACGCCGATCAAATGCGGGGCGATCTGACGAAGGCCGCCTCGCAAGTCTGACCACAGTCCGCCCGCGCGCCCGCGACCACGGCGCTGTCTCCTTCCTCGCCTTTCAAGACGGCACGGAACTGCGTGGCAAGAGCGGACGATGCTTGAGACCTGATCAGGTTCAACCTTACGGCGCCGTTCTCCGATGTGCCGCCGCCAGATACGTCATTTCGCATCTCCACGGTCTCGTGATATGATCTCCCGGTCAGACCCAAGCCGTCGGGCCGCCCGCAAAAATCTAGAGAAACTGGGGATGTTTTGAGCCAAATGCGCCGGAATACCACACATAAAGACCGGGAATACCCTTGCAAAAACAAGAGCTTCCCCGGTGATCC # Right flank : CGATCCGAAACCACGTCAATCCTAAGCGCAGACGATCAGATATGGATCACCCGGTCATACGCGTCGAGCACGCTTTCATGCATCATCTCGCTCAAGGTCGGATGCGGGAAGACGGCCTCCATCAGGTCTTCCTCCGTGGTCTCTAGTTGACGGCCCACTACATAGCCTTGGATCAGTTCGGTCACCTCCGCACCGATCATATGAGCGCCGAGAAGTTCCCCCGTCTTGGCGTCAAAAACCGTTTTGATCATGCCCTCTTGTTCACCAAGTGCAATTGCTTTGCCGTTGCCAATGAAGGGGAAGCGGCCGACCTTGACGTCATAGCCGAGCTCCTTCGCCTTGGCCTCGGAATAGCCCACGCTGGCCACCTGCGGGTGGCAATAGGTGCAGCCCGCGATGCTTTCGGGTTTCACCGGATGGACCTTGTTTTTGCCCGCGATCAGCTCGGCGACCATCACGCCTTCATGGGAGGCTTTGTGGGCCAACCAAGGGGCACCCGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGTCATTCAGAATTCGAGGTCCAGCCGCAAC # Alternate repeat : AGTTTACTCATTCAGAATTCGAGGTCCAGCCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //