Array 1 18-349 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFSU01000081.1 Escherichia coli strain JML203 sequence081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 18 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 80 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 140 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 200 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 260 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 320 28 85.7 0 ....................A...C.CT | T,C [340,344] ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.6 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACCGACGCCGAAAACTTG # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9408-10317 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFSU01000081.1 Escherichia coli strain JML203 sequence081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 9408 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 9468 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 9528 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 9589 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 9649 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 9709 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 9769 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 9830 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 9890 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 9950 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 10010 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 10071 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 10131 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 10191 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 10290 27 85.7 0 ...G...A...............-C... | T [10310] ========== ====== ====== ====== ============================ ======================================================================= ================== 15 28 99.0 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91544-93193 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFSU01000126.1 Escherichia coli strain JML203 sequence126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91544 28 100.0 32 ............................ TGCATGTAGCGCCACGCCGTGACCACCGTCCT 91604 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 91664 28 100.0 32 ............................ TGATGAAAGTATCCTTTGCCACGTTTTTCCTC 91724 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 91785 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 91845 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 91905 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 91965 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 92025 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 92085 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 92145 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 92205 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 92265 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 92325 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 92385 28 100.0 31 ............................ TGTACGCGAGATACGCGTGATAGAGATAAAC A [92409] 92445 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 92505 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 92565 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 92625 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 92686 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 92746 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 92806 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 92866 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 92926 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 92986 28 100.0 31 ............................ TGACAAAAATCCGTTAGGCGCGGAAATGATG C [93013] 93046 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 93106 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 93166 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : CGTCATGACTGCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //