Array 1 3288-3926 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNM01000011.1 Escherichia coli strain MOD1-EC6463 MOD1-EC6463_11_length_124208_cov_18.1497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3288 29 100.0 32 ............................. CCGCGCCAATACTTCTGGGGCTATCAATCCCC 3349 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 3410 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 3471 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 3532 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 3593 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 3654 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 3715 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 3776 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 3837 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 3898 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19428-21226 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNM01000011.1 Escherichia coli strain MOD1-EC6463 MOD1-EC6463_11_length_124208_cov_18.1497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19428 29 100.0 32 ............................. GCCATTTCATCCTTCACTGACCTTGCCAGGCC 19489 29 100.0 32 ............................. CAGAAATGCTGATGCGATCTTCAATTCTGCAA 19550 29 100.0 32 ............................. GGAAGTTAATAACGGCATTACAGAGTGTGAAA 19611 29 100.0 32 ............................. TAACGAGGAATTAAAAGCGGCAGTCAGGCGGG 19672 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 19733 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 19795 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 19856 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 19917 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 19978 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 20039 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 20100 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 20161 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 20222 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 20283 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 20344 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 20405 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 20466 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 20527 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 20588 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 20649 29 100.0 32 ............................. CCGCCGTTATATGGAAAGATTCCGGTTTGGTA 20710 29 96.6 32 ........A.................... ATGATCCGCGTGCGACCCTCGTTATAGTCTGC 20771 29 100.0 32 ............................. GTAAAAAATATGATTGATTTAAAGCGGGTGCC 20832 29 100.0 32 ............................. CAATTGGCGGAATACAGGACGGGTGGATATTC 20893 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 20954 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 21015 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 21076 29 100.0 32 ............................. CTGAAAAAAAAGGACTGGGTAACAGCGCGTGA 21137 29 100.0 32 ............................. CTGAAAAAAAAGGACTGGGTAACAGCGCGTGA 21198 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGTCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTTGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //