Array 1 44036-43736 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBLL01000014.1 Streptococcus agalactiae strain ES-PW-060 NODE_22_length_44037_cov_71.5011_ID_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44035 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 43969 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 43903 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 43837 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 43771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : A # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 41-472 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBLL01000037.1 Streptococcus agalactiae strain ES-PW-060 NODE_43_length_472_cov_59.4506_ID_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 107 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 173 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 239 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 305 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 371 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 437 35 88.9 0 ...............................TG.C- | A [465] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GTTCCAAAACTTCTTTAATACCTGAAATCATTGCGTTGTAG # Right flank : | # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 3-302 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBLL01000043.1 Streptococcus agalactiae strain ES-PW-060 NODE_49_length_302_cov_60.0578_ID_97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 69 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 135 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 201 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 267 36 86.1 0 ...........................C.G..G.CA | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TAG # Right flank : | # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 94185-95276 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBLL01000048.1 Streptococcus agalactiae strain ES-PW-060 NODE_7_length_95317_cov_72.1306_ID_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 94185 36 100.0 30 .................................... TTGATGTCTCGTATCGAATCACAGTCTTAT 94251 36 100.0 30 .................................... TTTGCCATATCCGCCATCTTAGGTGTTCTA 94317 36 100.0 30 .................................... ATAACCAGCTGCATGGTTTACCTGGTAAGT 94383 36 100.0 30 .................................... TCTTTCAATTCCTTGTAAAGTTCTAGTGCT 94449 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 94515 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 94581 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 94647 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 94713 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 94779 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 94845 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 94911 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 94977 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 95043 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 95109 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 95175 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 95241 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //