Array 1 18167-16878 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVBS02000052.1 Pseudomonas aeruginosa strain PABL077 NODE_52_length_18275_cov_88.8842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18166 28 100.0 32 ............................ AATCGGGGCTTTCTTGATATCCGTCCAAGCCT 18106 28 100.0 32 ............................ TTGTTGTACAGCACCTGGTCCATCAGCGCGCT 18046 28 100.0 32 ............................ ACCGCCACGCCGCAGCAGATCATCGACTTCTT 17986 28 100.0 32 ............................ TTGAGTTTCTCTACGAAGTCGGGGGATTCATC 17926 28 100.0 32 ............................ CGCAATCGACCCGCCCCGATCGCAAGTTTGCC 17866 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 17806 28 100.0 32 ............................ ACATAGGCCAGCTCTGGCGATTCATCGCCAAA 17746 28 100.0 32 ............................ ATTGATCACGGCGAACGTGCCGGGCAGGAGTG 17686 28 100.0 32 ............................ TCGTCCATTCGCGTGCGGGCCAGTCCCCGGAA 17626 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 17566 28 100.0 32 ............................ TGGTGCGCAAAGGCTGGAGTCCTGCGCATGAC 17506 28 100.0 32 ............................ TGCAGGCGCTGCGCGCGCAACTGGAGAATGGC 17446 28 100.0 32 ............................ GATGGCGTTGCCCGTGCCGCCTCGGGCCAGGG 17386 28 100.0 32 ............................ TCGATTCCTTTATCGCAGCGCGGCATGCGGAA 17326 28 100.0 32 ............................ GGCAAGGGCTACATGAACGTCACCACGGCAAT 17266 28 100.0 32 ............................ TGGACGACCTGGGTGTCGTTGGTTGACGAGTG 17206 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 17146 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGAGTAG 17086 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 17025 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 16965 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 16905 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110-737 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVBS02000036.1 Pseudomonas aeruginosa strain PABL077 NODE_36_length_47402_cov_92.1699, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 110 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 170 28 100.0 32 ............................ GCTTCACGCCCGTCATCGTGCGGCAGGCTCGC 230 28 100.0 32 ............................ ATCTCCTTCTGCCGGTTGTGATCTTTATTTCA 290 28 100.0 32 ............................ TTCACGATCCGTAAGAAGGCCTCGAAGATTTT 350 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 410 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 470 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 530 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 590 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 650 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 710 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10069-9261 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVBS02000036.1 Pseudomonas aeruginosa strain PABL077 NODE_36_length_47402_cov_92.1699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10068 28 100.0 32 ............................ TGCTGCAGAAGATGACCGGCGGACCACCACGC 10008 28 100.0 32 ............................ TGCGGTTGGTGGCCTGAGATGCTGCGCGCTGA 9948 28 100.0 32 ............................ GTGCCGAGCTGACCGACAACAACAAGGTCAAG 9888 28 100.0 32 ............................ AGCCACAACGGCGAGGCGCTAACAAGGATCGA 9828 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 9768 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 9708 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 9648 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 9588 28 100.0 32 ............................ AGATCACCGAGCGCTATTCGGAGCCGGCCGAA 9528 28 100.0 32 ............................ TCTTCGCGTCCCTGGCCTTGGCTCGATACAGA 9468 28 100.0 32 ............................ ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 9408 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 9348 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9288 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //