Array 1 225466-224137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEC010000001.1 Salmonella enterica strain WW60 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 225465 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 225404 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 225343 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 225282 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 225221 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 225160 29 100.0 32 ............................. ACGGACCCCGACAACGAAATCGAATTAGTGTG 225099 29 100.0 32 ............................. CGAATAACAAAATTCTTAATCAGGATTCCGAG 225038 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 224977 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 224916 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 224855 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 224794 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 224733 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 224672 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 224611 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 224532 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 224471 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 224410 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 224349 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 224288 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 224227 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 224166 29 96.6 0 ............T................ | A [224139] ========== ====== ====== ====== ============================= ================================================== ================== 22 29 99.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 242935-241626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEC010000001.1 Salmonella enterica strain WW60 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242934 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 242873 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 242812 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 242751 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 242690 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 242629 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 242568 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 242507 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 242446 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 242385 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 242324 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAAACC 242263 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 242202 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 242141 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 242080 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 242019 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 241958 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 241897 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 241836 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 241775 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 241714 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 241653 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //