Array 1 58153-54116 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQH01000080.1 Serratia marcescens strain 1703 NODE_112_length_117404_cov_20.363310, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58152 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 58092 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 58032 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 57972 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 57912 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 57852 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 57792 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 57732 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 57672 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 57612 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 57552 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 57492 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 57432 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 57372 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 57312 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 57252 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 57192 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 57132 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 57072 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 57012 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 56952 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 56892 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 56832 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 56772 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 56711 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 56651 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 56591 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 56531 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 56471 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 56411 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 56350 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 56290 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 56230 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [56184] 56183 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [56175] 56122 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 56062 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 56002 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 55942 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 55882 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 55822 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 55762 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 55702 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 55642 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 55582 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 55522 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 55462 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 55402 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 55342 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 55282 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 55222 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 55162 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 55102 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 55042 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 54982 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 54922 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 54862 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 54802 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 54742 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 54682 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 54622 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 54562 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 54502 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 54442 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 54382 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 54322 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 54262 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 54202 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 54142 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 69376-67002 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQH01000080.1 Serratia marcescens strain 1703 NODE_112_length_117404_cov_20.363310, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69375 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 69315 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 69255 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 69195 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 69135 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 69075 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 69015 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 68955 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 68895 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 68835 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 68775 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 68714 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 68654 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 68594 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 68534 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 68474 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 68414 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 68354 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 68294 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 68234 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 68174 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 68113 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 68053 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 67993 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 67933 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 67873 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 67813 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 67753 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 67693 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 67633 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 67573 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 67513 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 67452 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 67392 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 67332 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 67272 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 67212 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 67152 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 67092 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 67032 28 96.4 0 ....................A....... | G,A,A [67005,67009,67011] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //