Array 1 304491-304223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHN01000045.1 Erwinia mallotivora strain BT-MARDI contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 304490 28 96.4 32 .............A.............. TACGGTCGTCAGTACCTGATGATTGTTCAACA 304430 28 96.4 32 ...........C................ ACATGCAGGACGCCATGTATCGCGAGGGCTTT 304370 28 100.0 32 ............................ TGAGAGCCAGCATAGCCAGCTGCTAATGAACC 304310 28 100.0 32 ............................ ACGTTCGTCGTGGCCACGGCATCTCTGCTGAG 304250 28 92.9 0 ...........C..........C..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GACCGCTGACGGCCGATAATCTGACCATGACCGATGTGGCAACGCCTGTTCTGGTCACCAGCAGCTACAGCGGGCAGTCCGGGGCGGCGGGCCACACGCTTACCAGTGCCATTGAGCACGCAGCAGTGACCGCATCCACGCCCAAAATTCGTGGTATCCACATTTCGAATCTCAGCGCCACCGGTGCCAGCCACGCGATGATTTTCAGCGGCCTGCCGGAATCGCAGGTGCAGGATGTGGTGCTTAAAAATATCGATATTGCAGCAAAACAGGGGGTGCAGGCGCGCTACGTTAGCGGCAGTGGACAACATGTGCGGATCAGGGTTGAACAGGGACCGATTGTCGCGCAAGGCCCGCAGGCAGCGTTAGCCCTGAGTCAGGACCTGACGGCGTCAGATGCCACGGGTGATAATGCAAAGCAGCATTGAGGCAGAAAATCACACTGACAGGCTGCGGTAAAGGGTGGTGATAAAGGTGCTGCCCACAGGCTGGCTCTTCTG # Right flank : AACGCCTGACGGATTTACCTGTGGAAGGGGCCAACGGCTGAAATCACCATTATGGCCCCCTTCTCTTACACGAAGCCGATGTGGCTGTTACTCATCCTCATCTTCTTCATCGCGGGGTTTTCCGGCAAAACGATTACGCACCAGCACAAAAAACACCGGCACAAAGTAGATCGCCAGCAGGGTCGCCGCCACCATGCCACCAATTACCCCGGTGCCGACCGCGTTCTGCGCACCAGAACCTGCACCAGAGCTGAGTGCCAGTGGCAACACGCCAAGGATAAATGCCAGTGACGTCATCAGAATCGGCCGCAAACGCATGCGCGCTGCCGTCAGTGTGGCTTCCACCACGCCCTTCCCTTCCTGCTCAATCTGATCTTTAGCAAACTCGACAATCAGAATCGCGTTCTTCGCCGACAGGCCAATGGTAGTCAGCAGCCCGACCACAAAATAGACATCGTTATTCAGGCCACGCAGCAGGGTTGCCACCAACGCACCAAATA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 311065-311873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHN01000045.1 Erwinia mallotivora strain BT-MARDI contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 311065 28 100.0 32 ............................ TTCAGGAGCCGGAACAATTCAGGACGATCAAG 311125 28 100.0 33 ............................ GCATCCAGCGTTTTGAATATACGCTTCCCCCCT 311186 28 100.0 32 ............................ AACACTGGTCGCGGAAAAATCTAGGGTTCCGG 311246 28 100.0 32 ............................ AGCAGCCGTGGCTGTTCAGTAGGAGCAAGGAA 311306 28 100.0 32 ............................ TGAACTCAGCTTCAAAACCTGCCAGCGGCGTG 311366 28 100.0 32 ............................ TATAACTGGATCGTCAGCAAACTTAACAAAAT 311426 28 100.0 32 ............................ TACGTTATCCGGGCGCTCAAAACTGCGATTAC 311486 28 100.0 32 ............................ GCGTAGAGCATGTGCATGGCGTAGCTGTGCCG 311546 28 96.4 32 ............A............... GACAAAACAGCAGATAGTGTGCAGCCGGAGTT 311606 28 96.4 32 ............A............... TGAGAGACGACGCCTTCGGGCGGTAAACCCGT 311666 28 96.4 32 ............A............... TTCATCGAGCCTGAACTCGCCTAGCGCAACAT 311726 28 92.9 32 ............A....T.......... ATCATGATGCGGCTCAGAGACGCGCACGCCGT 311786 28 92.9 32 ............A....T.......... CTTTTCTGTAGTCGGGACGGCGCTTTTTAAAC 311846 28 75.0 0 A......A..A.A.......AGC..... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 96.4 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TCGCCTCTTTACTGGGCAAGTTGCCCACGCCGGACGAATACCAGCAGTTTATGGATCAGGTTGATAAGACGGCGGTGGATACCTATCGTTATCTGAACTTCGACCAGCTGGCGCAGTATACCGAGAAAGCTGACGGCGTTATTTTCCAGACGGCGGTGTAAGAAGCCTGCGGGCAGCTTGCGCGCTCAGGCGATGCAGAAGCAGTCTGACGCAATCTGTGTTTTGAAAATCCGGGAATTATTTTTCCCGGATTTTTTTTGTCTGTTTCCGGGGCGGAAGCTGATTTTATAAACGCTTCAGAGCTGCGTCGGTCATTGTCTGTTCAGCGATTACCGCATGTTGAAAAGAGAAAAATCGGGTGATGGAAACAACCCTTTTTTTTACTGCAAATTTAACTGACTGATAAGAAATGGGATTTTTAAGGAGATGGAAAAGAGGGTATTTAAGCGATGGCGGTCAAATTTCTTTTTAAATCGGTGAGTTAAGCTTTATGCGCTACG # Right flank : ACTCAGGTGAAACCAGACTGTAAATTCAATTTAATCAATAATATATTTTTCTCATAAACAGCGCCTTCGGGAATGCCCCACAAAAATTGCTTTGTTTTAGTAAGGGCTATCACTAAAAATCGGTGCTCAGGGGAAAGAGGGGTGTTATCTGTAGAATCAGGCTCAAACATAGTGGCGCTAAAAACTGGCATAAAGCCAACGATAAAACACCCATACTGCATCATGCATACAAAACCCGATATCCCTCATTTTCAGCATCTTTCAAACTTATATTTGATATCCTGAAACAAGGATTTTGAGATAATAAAAAATCACCTTCTTTCTGATTTATTGATTATGTTAGTATTTTTATTGTATTTTTGAGATAACCTCATGCAAGAGTTGAGATAACTAAACATCATGGCTCAATTTAATCACTTTGAACTCTCGCTTCTGAATCCCAGTTTTGACTCCCTTCTGGTCGATGCGCTGACCGAACTGGAGTTACTCCGGCATCTGCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 322644-323872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHN01000045.1 Erwinia mallotivora strain BT-MARDI contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 322644 28 100.0 32 ............................ TGGCCGAAGTGGCCGGTTACAGTGATGACCGC 322704 28 100.0 32 ............................ TCAGAAAATATTGGCATGAATTCTTCGCCAAT 322764 28 100.0 32 ............................ AATACAGGAATTGCGTAACGGGGTCTGGATGA 322824 28 100.0 32 ............................ TCGCCGAACGGGTTCGACCGGGCCGGGATTAT 322884 28 100.0 33 ............................ CGATTCCTGTGCTCCGACAGGTGTTCAGACCCT 322945 28 100.0 32 ............................ TGATGGATATAGAGCGCCATATTCGGGAGTTG 323005 28 100.0 32 ............................ AGCGTTCGTCACTGTACCGGGCCACTTCTGCC 323065 28 100.0 32 ............................ CATACAAACGCGACAGTGCGGTACTCAAAGCC 323125 28 100.0 32 ............................ CAGATACCGGCGTGATGCCGGTTTGCACTGGT 323185 28 100.0 32 ............................ TTAACGAAACCGTAGCAGGAAAAAGGGCTATA 323245 28 100.0 32 ............................ TCCATCAGGATAAGTCACAACCATCGTTGTGA 323305 28 100.0 32 ............................ AGCTGACGGCCTTTGCTGAAACCCATCCCGAA 323365 28 100.0 32 ............................ CGTCCCGGTCAACAATAAACAGCCCGGCCAGT 323425 28 100.0 32 ............................ ACATCTTATTCCGTCTATTTTTGGCGAAACAT 323485 28 100.0 32 ............................ TTCAGCGTATCCACCACCGCCACCACCGCCGC 323545 28 100.0 32 ............................ GGCAACCCGAAGCAAATATTCGGTATCTTTTC 323605 28 100.0 32 ............................ TGAACGCCTGCGGCTGAGTTGGTTATTCCTGA 323665 28 100.0 32 ............................ CAAAATAACATCCGGACGGTACAGCCGCGCCC 323725 28 96.4 32 ...............A............ CTTTTCTCCAGCATTTTCTTGAGTTCCGTAAC 323785 28 96.4 32 ...........C................ TGGACAACAAACGCCAGCGTCTGAACGGCCTG 323845 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGCGTTGTGCGAACTGGAAGCGGTGCCCTGGCGTAAGGGGTTGAGTGACCATATTGATTACAGCGGTATTTTGCCGGTGCCGGCAACAACGCAATACCGTACCATCAGCCGGGTGCAGTGTAAGAGCAATGCGGAGAGGCTGCGGCGGCGCTCGGTGAAGAAAGGCTGGCTGAGCGCGGATGAGGCAAAAATGCGCATTCCCGATGCGCATGAGCAGCGTTTATCACTGCCTTTTATTCGCCTGAAAAGTCTGTCAAGTAGCCAACAGTTTCTGTTGTTTATTAAACAGGGGCCGCTGGTGGCCGAGGCCGTTCCCGGCAGGTTCAGTGCCTATGGACTGAGCGGACAGGCAACCGTCCCCTGGTTCTGACCCTTTTTTTCACACTGTTTTTAACTTGTTGATATTTAAGGTCAGGGACGGGTAAGTGAAAAAAAGGGTTTTCAGGAGGATTATTCTTTTTTTCTTTTAAAAACGTAAGGTTATATTTAACTGCTAACA # Right flank : ATATCTGCCCGAACTGGCAAAACCCGGTAAATCGCTGAACGTCAATTTCACCGTCCCCCAGCCCCTGACAAGGAAGGAAATGACTCTTCCGGCTATCCGCAAGCTGGTTGTCTGGGGCTTCCATGCCCGTCTGTAATCATCCTCAGCATGACCATCAAGCCGCGCTGTCAGATAAAAATATCTTTAACGCAATAAATTATTAATCACGGGCTGAACGCGTCAGTGGGATAAGCAAGTTAATAATCACTCACAGGTAGCGTGATAACGTTTTCCGCCCGCATTGGTAAATGAGAAAGCGTGGCAGGTCTTCAGGCGTTTATTAAGGTCGGTGGATTTATAAATGTAGACCGTGACATGTTGCTTCCCGTGGAAGGGATCATAACCACCCGTATGCCACAGGCTGCTTTTCAGATAGAGATTGGTGTTGCCAACGCTGGGATCGCTCGCCCCATTGGTAATGCTTTGATCCGCTGACTGACTTAATGTCTGCTGGATGGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //