Array 1 1-929 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIW01000278.1 Acinetobacter baumannii strain ABOB06 contig-60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 96.6 31 ............................T AAACCAAGAACTTGAAGATTTTGATGCTTAT 61 29 96.6 31 ............................T AAAAATAGTGTGTTAATTATTTATGATGAAA 121 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 181 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 241 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 301 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 361 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 421 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 481 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 541 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 601 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 661 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 721 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 781 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 841 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 901 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 16 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6804-3781 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIW01000253.1 Acinetobacter baumannii strain ABOB06 contig-5000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6803 28 100.0 32 ............................ ATCATCGTAAGCATTGAATCGCGTGCCTTCAA 6743 28 100.0 32 ............................ AATGAGAAGAAAGTGGTTGCTATCGACTTCTT 6683 28 100.0 32 ............................ AATATGCTCGAATGAATTCCTTGTAGCATTCT 6623 28 100.0 32 ............................ AAGAACTGTGCGTCTTGGCGGTGGGAAAATCA 6563 28 100.0 32 ............................ ACTCCATAATTGCAGGTGTTGAAAGCTCACCG 6503 28 100.0 32 ............................ TTCTTGATCATCGTTATGTAAAAACCATTCCA 6443 28 100.0 32 ............................ AAGAAAAGTATGAACAGCAACTTATAGAAAAA 6383 28 100.0 32 ............................ GATGACCGTACCAACTGGATTTTGATATTCAT 6323 28 100.0 32 ............................ TTGTTGTGTATATAGGTTTTGCAGCTCATCTA 6263 28 100.0 32 ............................ TATAATCGAAAAACATCCAAAAGCGGGCAAAA 6203 28 100.0 32 ............................ AAAACGACCTTGTGACTCTGTGAATTCAATCT 6143 28 100.0 32 ............................ AGTTGCAACTTTAACAACTGACGGTACTGCTG 6083 28 100.0 32 ............................ ATAGTGGAAATACACGTAAGTTATTGATTTAT 6023 28 100.0 32 ............................ TGTTGTTAGGGCTATTTCTGCTTTATCCGATA 5963 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 5903 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 5843 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 5783 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 5723 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 5663 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 5603 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 5543 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 5483 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 5423 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 5363 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 5303 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 5243 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 5183 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 5123 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 5063 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 5003 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 4943 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 4883 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 4823 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 4763 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 4703 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 4643 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 4583 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 4523 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 4463 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 4403 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 4343 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 4283 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 4223 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 4163 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 4103 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 4043 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 3983 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 3928 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3868 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3807 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 51 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11894-16059 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIW01000253.1 Acinetobacter baumannii strain ABOB06 contig-5000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 11894 29 89.7 31 ....G.......CC............... TCTTCTCTCTGATTACAAGCTCCCTGGGGCA 11954 29 86.2 31 ....G.......CC..............A TAAGGACGATGCAAGTGATAGTGCTCACCGA 12014 29 86.2 31 ....G.......CC..............A TGCAGATAAAACAGTAAAACTCTATGAAAGC 12074 29 86.2 31 ....G.......CC..............A CTGGTTAATTTTAATAATGCGGATGGATATT 12134 29 89.7 31 ....G.......CC............... CTTAATCTCTTCAATGTTCATCTTCAACCCT 12194 29 86.2 31 ....G.......CC..............A AAACGTTGAACATTAGTAAGTGTTAGAACAC 12254 29 89.7 31 ....G.......CC............... TACGATGGCCAACAGAAATATTAGACATATA 12314 29 86.2 31 ....G.......CC..............G ATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 12374 29 86.2 31 ....G.......CC..............A ATCCAAACAGCAAAACCGATGATACCTGCAA 12434 29 86.2 31 ....G.......CC..............A GTGGGCTTATATCTCTTCTATAAAAAACGGA 12494 29 86.2 31 ....G.......CC..............A ATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 12554 29 86.2 31 ....G.......CC..............G GAGTCAGGCACACTATTAGATAGCAGTGTGC 12614 29 86.2 31 ....G.......CC..............A TGATGAACCTGTCTTACCTTCAGATCCTTCT 12674 29 86.2 31 ....G.......CC..............A AGCATTTCAGTTGCACCAAGATGAATACTTT 12734 29 89.7 31 ....G.......CC............... CAAGTGCAGATGCAGCCTAATTATTCTTCTT 12794 29 86.2 31 ....G.......CC..............A AGAACGTTTGGCAGCAAAAGGAACATTACCA 12854 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 12914 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 12974 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 13034 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 13094 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 13154 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 13214 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 13274 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 13334 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 13394 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 13454 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 13514 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 13574 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 13634 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 13694 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 13754 29 89.7 29 ....G.......CC............... GAACCAATATGCTGCCTAATTGCCATAAG 13812 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 13872 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 13932 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 13992 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 14052 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 14112 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 14172 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 14232 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 14292 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 14352 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 14412 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 14472 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 14532 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 14592 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 14652 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 14712 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 14772 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 14832 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 14892 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 14952 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 15012 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 15072 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 15132 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 15192 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 15252 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 15312 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 15372 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 15432 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 15492 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 15552 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 15612 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 15672 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 15732 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 15792 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 15852 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 15912 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 15972 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 16032 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= =============================== ================== 70 29 93.1 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : | # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //