Array 1 210743-209080 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDS01000003.1 Riemerella anatipestifer strain RCAD0131 ZB100002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 210742 47 100.0 30 ............................................... CTACTGTTACTATAGTTTCTATTTGTACTA 210665 47 100.0 30 ............................................... ATATTTTTCTTTCTAATTTCGGTCAAACCT 210588 47 100.0 29 ............................................... AGTTGCTTCGGAGTTATTTCGCTAAATCG 210512 47 100.0 30 ............................................... GGACGATAGGCTACGGACAAACATATTACC 210435 47 100.0 30 ............................................... AACAGTACCATAAAACGCCAGCTTTTCAGA 210358 47 100.0 30 ............................................... ATCACTCGCTACATTAAGGAGTTCTCCCAT 210281 47 100.0 30 ............................................... ACTTCGTACCACTCCATGTTTTCTGTGATA 210204 47 100.0 30 ............................................... GCTAAAGCAATACGAAAAATTTTCAAAGCA 210127 47 100.0 30 ............................................... TTGTACTTTATATATGATACCATTTCTTCT 210050 47 100.0 30 ............................................... AAAGAGAAAGTCGTGGAGACCACGAATGAG 209973 47 100.0 30 ............................................... ACCTGATAGTATTTGTAAAATCCTGCACAC 209896 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 209819 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 209742 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 209665 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 209588 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 209511 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 209434 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 209357 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 209280 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 209203 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 209126 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 22 47 98.5 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //