Array 1 6815-4799 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJO01000007.1 Listeria monocytogenes strain FSL L7-0399 NODE_7_length_169910_cov_32.998086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6814 36 100.0 30 .................................... AGTTTTGAAGGAAGAAATTGCTAAATCCTT 6748 36 100.0 30 .................................... TCTAATGATGTTATTGATGCAAACCAACGT 6682 36 100.0 30 .................................... AAAGAATATTATTGAAATTGATATTGAACT 6616 36 100.0 30 .................................... AGTGGCGTATAATAAGATTGCTGAACGTCA 6550 36 100.0 30 .................................... ACTATACCAACAAAGACCGCGTCCGGCTGA 6484 36 100.0 30 .................................... ATTAGTATTGTGTTTTTAGTAACTGGTTTG 6418 36 100.0 30 .................................... TGAAAACATTCCGCAAGTTCACGCAAAAGA 6352 36 100.0 30 .................................... AAATTGTTACAGGGGTAAAAAATGGTTCGG 6286 36 100.0 30 .................................... ACGATTAACATTTATTCCCTCTGAAGATTA 6220 36 100.0 30 .................................... AGGTTTATCCGAACTAGAAGATAAAATTTT 6154 36 100.0 30 .................................... CGATGCAACAGTGTTAACTGAATTGGTATT 6088 36 100.0 30 .................................... GGGATAAGCAAGCTAAGTCTATGCAAGATA 6022 36 100.0 30 .................................... TCTCCAACCTAGTAAACGATTCAATAGTTA 5956 36 100.0 30 .................................... CAAGACTGGAAAATATTAAGCAATATCTAA 5890 36 100.0 30 .................................... AAAAGGGTAAGGTAAATCTAGTTCATACAG 5824 36 100.0 30 .................................... CACCTCGTTAAGTTTATATTAAAACTATGT 5758 36 100.0 30 .................................... TCTAAGTTAAACATAAATTGATTAAACCTC 5692 36 100.0 30 .................................... GCAAGTGTTTAATTTGCTTCTCGGGTCATT 5626 36 100.0 30 .................................... TAACCCATTGACATACTGGTCCAAATTCTT 5560 36 100.0 30 .................................... TATTATGAAAAACTTAGGGGGGAAATACTG 5494 36 97.2 30 .....................A.............. ACAATGGTCTTCAAAGTGTCAGCGACCTCT 5428 36 100.0 30 .................................... TTCGTTTAAGGTTGTTGAAGATGCGTATAG 5362 36 100.0 30 .................................... CAACAGCACTATCAAAGAAGCGTTCGAACG 5296 36 100.0 30 .................................... TAACTCTTCTTTCGTCATATTGTCATGCGT 5230 36 100.0 30 .................................... TTATGAAGAGGTAATGCGAAAACTTGGAAG 5164 36 100.0 30 .................................... AAAGTTCAATAATATCTAAGTAATCTGTAT 5098 36 100.0 30 .................................... AAAGTTCAATAATATCTAAGTAATCTGTAT 5032 36 100.0 30 .................................... GAGCTATATTTTCAAGCAAAGTATCTACTT 4966 36 100.0 30 .................................... TTAATTTGATTGTTTGTACATTTTCGGCAG 4900 36 100.0 30 .................................... CATTGACTATATGCGAAATAGGATGGGTTA 4834 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCCAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCTACAATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCACTACAAAAGAAACCTCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACACCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCACGACGAAACGGGAAACAAAATAAAACGAATCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGACTTCCAAATCCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACATACAAGAAATCATCCTGCTAAACAAATAAAACTCTCTCACCCACAGAGAGTTTTTTCTTTTCTCAAAAAAACAAACTCAAATTCCTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 186839-184342 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJO01000002.1 Listeria monocytogenes strain FSL L7-0399 NODE_2_length_486828_cov_28.417443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 186838 29 100.0 37 ............................. AGATTCTCATTTGTAAAACTGATATTATCAATTTCTT 186772 29 100.0 34 ............................. CCAGTTCGGTCACTGATAAGCTGTTGTATCTGGT 186709 29 100.0 34 ............................. TTTTGTCGATTATGTTTTTTAGCCGTTCTAAATC 186646 29 100.0 36 ............................. CAAATATTCCGAAAGTAAGCCTCGATGTCGACTTTG 186581 29 100.0 36 ............................. TCCAAATTTTTCAAGAGGATAATTCGTTTTATCCTT 186516 29 100.0 37 ............................. ATTTTCACCATTTATATTTCCTTCTCTCATTATTATT 186450 29 100.0 34 ............................. TGATATCTGCTTCGGTCATGTTGACTTGTTTACC 186387 29 100.0 37 ............................. GAATACTTTTGCCGTAAGGGTACATCGTTGTGTATAA 186321 29 100.0 37 ............................. AACATCCCCCAAAGTGACCCAGCAAGTGGAGAGAGTG 186255 29 100.0 35 ............................. ATTTTAGAGGTACTGGAAGATAATTTAGAAGAAGC 186191 29 100.0 37 ............................. ATGCGTTATGAGTCCAAAAAAGAATTTGTCACAGATG 186125 29 100.0 35 ............................. TGTTAGAACGGTAAATCGTCATCCGATATATCAAT 186061 29 100.0 37 ............................. ATGTACAGGAGTATAATTTCAGATTACTTAATTTTAT 185995 29 100.0 36 ............................. CGTTTCAACTTGTTGCGCAAGAGGGTGCTTTGTGGC 185930 29 100.0 37 ............................. TTTTTCGTTCATAGTCTAATTGATAGGAAATAACATC 185864 29 100.0 35 ............................. AGAACCCTAAAATAGGACTATTGAATATTTTATAT 185800 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 185735 29 100.0 38 ............................. GCTGGTGTTTTCGTACCTTTTCCCTCGGGAGTACGAAG 185668 29 100.0 37 ............................. ACTTTTTCGGCAAGCTTTTGCGTTACTTTTGCTAGCG 185602 29 100.0 36 ............................. ATTAAGTAAACTGACTGGCATCTCACAAAATACATT 185537 29 100.0 36 ............................. CTTGTTGAAGTCGTTGATTTAATCGGTCTATACTTG 185472 29 100.0 37 ............................. AAAATCCTTTTTTGTTGTCATACCAAGAAAGTTTTGT 185406 29 100.0 36 ............................. GCATATCGAAATAAACTAAAAGCAGCGGTCAAAAGG 185341 29 100.0 36 ............................. GAAACCCAGCTCGAAAAGTAACTATAAAAGGAACTG 185276 29 100.0 36 ............................. TATTTTCTCAACCTTTTCAGCTGTATCAATAAAAGA 185211 29 100.0 37 ............................. CCTTCTAACAATGCTATAAATAAGTCATTAAGGCGCT 185145 29 100.0 36 ............................. ATGTAACGAACTTGTTTACATCCGTTTCGGAGTAAT 185080 29 100.0 36 ............................. GGAGTTCAACAGCGATATGGCGTTGGCGGTGATATT 185015 29 100.0 34 ............................. GTAATAGAAGAAGAGGATCTATACGAAACTACTA 184952 29 100.0 36 ............................. TTGCTAGACCTCTAAATCATCTGCGAAGTCATCTGC 184887 29 100.0 35 ............................. CCACTCTAGCAGTTTTATAACCGCGCACATCGACG 184823 29 100.0 36 ............................. ACGCTCTCTGCGAGCTTTTGAGTTACCTTAGCCAGT 184758 29 96.6 36 ..........T.................. CTGCGTTCGTTTCGCGTAAAATACCCAGTCTACCGT 184693 29 100.0 34 ............................. ATACTTGTTGTGCGCATAAACAAGTATTGCTGTC 184630 29 100.0 37 ............................. CCTCATTCAAAATAAAATCAATCACTCTGTAATATCT 184564 29 100.0 36 ............................. TTGAAAACTGGGGGTTTTATCAAGGTAGCGACATAG 184499 29 100.0 36 ............................. AATTCTGCACAGAATTTACCAAGCGCAATCATCAAT 184434 29 100.0 34 ............................. GGTGTTTGCCTTGTTAACTTGTCACGAGAGATAG 184371 29 93.1 0 .......................C....C | A [184346] ========== ====== ====== ====== ============================= ====================================== ================== 39 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGTGG # Right flank : TTCCTCTTAAAATTCAAACCCAAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 204291-203621 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJO01000002.1 Listeria monocytogenes strain FSL L7-0399 NODE_2_length_486828_cov_28.417443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 204290 29 100.0 35 ............................. TTTAAAAATGCACAAGGAGAACAAGAAGCCGATTT 204226 29 100.0 35 ............................. AACTTTGACTATATTAAGCAAGATATTGTTACTGC 204162 29 100.0 36 ............................. TGGTTCTAATATAAGTGGTTGTCCCGCCCATTTACC 204097 29 100.0 35 ............................. GCTTATCATACATACCAGATTTATGGATTGCCGCC 204033 29 100.0 34 ............................. TGTCCAGCATAAATGGCAAGTTTTAACTTTTTAC 203970 29 100.0 34 ............................. CTTTCACTAGATACTTTTGTAGCTTTGTAACTGT 203907 29 100.0 35 ............................. TGCGTTACGTCGTCCAACATGCGACACAGTTCGCG 203843 29 96.6 36 ....A........................ GTGGTTTCAGAGGCTGTGGCTGATTGGTTTGAGGAA 203778 29 96.6 34 ..............A.............. TTAGCTTGCAGATTTGGTACTGATGAAAAATAAA 203715 29 100.0 37 ............................. GAAAAAGCACTTTTCAGTACTCGTTCGTTTTCTTTTT 203649 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 97.8 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGAACTTGAGTAGTGTGAAAAACACCAGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAATGGGAATTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCATTCAGATTTAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //