Array 1 54139-55082 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPTM01000011.1 Escherichia coli strain ECAJ7 L37_S37_L001_R1_001__paired__contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54139 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 54200 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 54261 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 54322 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 54383 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 54444 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 54505 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 54566 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 54627 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 54688 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 54749 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 54810 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 54871 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 54932 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 54993 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 55054 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62388-60590 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPTM01000010.1 Escherichia coli strain ECAJ7 L37_S37_L001_R1_001__paired__contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62387 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 62326 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 62265 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 62204 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 62143 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 62082 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 62021 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 61960 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 61899 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 61838 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 61777 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 61716 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 61655 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 61594 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 61533 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 61472 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 61411 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 61350 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 61289 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 61228 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 61167 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 61106 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 61045 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 60984 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 60923 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 60862 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 60801 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 60740 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 60679 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 60618 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : | # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //