Array 1 1493242-1493559 **** Predicted by CRISPRDetect 2.4 *** >NC_015873.1 Megasphaera elsdenii DSM 20460, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 1493242 23 100.0 51 ....................... TATAATGAAGGTTTGATCATGACGACAGCTTGTATTGCTGATAAGAACCAT 1493316 23 100.0 51 ....................... ATCATCTTTAAAACATATAACTTTTTCATGATAAACTCCGATAAGAACCAT 1493390 23 100.0 50 ....................... TTAGGCGGAGAGCCATTGTGTAATGACAATGTCTCTATGATAAGAACCAT 1493463 23 100.0 51 ....................... CATGGTACGCGGTTAGCACTCAACAAGCGCCACTTGCTGGATAAGAACCAT 1493537 23 82.6 0 ..................T.TCT | ========== ====== ====== ====== ======================= =================================================== ================== 5 23 96.5 51 AATCCCCGTAAGGGGACGGAAAC # Left flank : CATGTTGACGAAATGCCTCAGGGAACTGGAACAGGACAAGTTCATCACAAGGAAGCAGTACAGTACGATACCGCCAACGGTTGAGTATTCACTAGCAGAACGGGGAAAGACATTGATCCCGGCACTGGAGTCGGTATATCAATGGGCTGATGATCAAATGAAGAAAGAAAACAAAATTCAAACATCTGACAGTCTCTCATAAACAACACAGCCCATGCTTGTCTAATAGCAGATCTTTACGAATCATGAACTATGGTTTTTGATGGACTTGTGATATAATATAAGTTAGTTAGGTAATACCGTATTTATGCGCCCAACTTGCTTTTTGAAAACATAAAAAGAATCATTCCGCCCCGCTGGCTTAAAAATCAGCGATAGGACGATTTTTGAAAATCATTTTCCGCAAAAATGTGAAAAATGAGGAGAAAAAAATCCGCCCCGCAAAAGGTATTTTCGATGGCGCTATGAAGCCATTTATAAGGGGTGCGGATAAGAACCAT # Right flank : TATTTGAGAGGTGATGTGAAATGAGCTTTGCTTATATTACGGAAAAAGGCGCTACGATTTCTAAAAAGGACGGACGCTTTGTTGTTGGACGAAATCATGAAACCTTGTTGGAGATTCCAGAAGAAACATTGGAAGGCTTATTAGTAACGGATACGGTCCAGCTTACATCACATGCCATAGTGTCTTTATTACATTTGGGAATTCCCGTTACATGGCTTTCTTCCCACGGTAAGTATTTTGGCCGATTAGAATCGACAAGACATGTTAGTGTATTTAAGCAAAAGCAGCAATTTCTATTGCAGGACCAGCCTTTTTCTTTGGAAATGAGTCGCCGCGTCTTATTAGCTAAAGTCCATAATCAGTTGACCTTATTGCGTCGATACAATCGGGACCGGAAAATACCGTCAGTCATGATAGATATTCATAATATGATGACTATGGCTGATCACTTAAAAATAGCAGAAGATTGTGAATCCTTGATGGGGTATGAAGGGATGGCT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.37, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1503273-1505789 **** Predicted by CRISPRDetect 2.4 *** >NC_015873.1 Megasphaera elsdenii DSM 20460, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 1503273 23 100.0 50 ....................... TTGTGACATAATCACGTTGACGTTCTACTAACATGTCTGATAAGAACCAT 1503346 23 100.0 52 ....................... TCACCGGCGATTCTAACGGCGTCTTCCGGGCTTTGCGCTTGATAAGAACCAT 1503421 23 100.0 48 ....................... AGGCCCCTTCTTTATCTAGTTTGCTTTTTGCATTTTGATAAGAACCAT 1503492 23 100.0 48 ....................... ATGAGACAAGCCAACTAAGAAAGAGAGGTAATTTACGATAAGAACCAT 1503563 23 100.0 50 ....................... ATACTTGCATAGGAAACATTAATTCCATAGCGACAATAGATAAGAACCAT 1503636 23 100.0 51 ....................... GACAAAATCGACGCCTACGAAGCGTTAGCCATACAGCCAGATAAGAACCAT 1503710 23 100.0 53 ....................... TGAAAATTACTCTTAGTGCTATGATGCGGCGTTCCCTCACTGATAAGAACCAT 1503786 23 100.0 49 ....................... TGTCACCGCTGTAGTAAGTTACAAGGTGGTCGATAATGATAAGAACCAT 1503858 23 100.0 52 ....................... CCTCCCTTGATAATGACATAGTGCCTGTTAGGGAAAGCCTGATAAGAACCAT 1503933 23 100.0 51 ....................... TTCTCTGTAGCTACTTCTTTTTGTTGACTACATGTTACCGATAAGAACCAT 1504007 23 100.0 51 ....................... TAAAACTAAAAGCACATAACTTGCAAACGCGACGCCTAAGATAAGAACCAT 1504081 23 100.0 52 ....................... TTCCTCAGCATAAAACGCTGCTAATTCATCGGCGATTTGAGATAAGAACCAT 1504156 23 100.0 51 ....................... GTCGCAAGAACATAAGCAACCGCAACAATCATAATAGAAGATAAGAACCAT 1504230 23 100.0 50 ....................... AGCTTGAGAAGCCCCATAGCTTCACATTCATGAAATTCGATAAGAACCAT 1504303 23 100.0 53 ....................... ACGTTCTACGCGTTCTTTCAAAACGGGGAAGTTATCAATTTGATAAGAACCAT 1504379 23 100.0 48 ....................... TTCAATATCGTCACGGTATTCTGGCTTGCTCTGTTTGATAAGAACCAT 1504450 23 100.0 51 ....................... TAGCTTAATAGCTTTGTGTTCGTAAATCTTCATTGTCTTGATAAGAACCAT 1504524 23 100.0 49 ....................... AACAACCATACCCGACCGTTTGGAGACGCTTCTAACCGATAAGAACCAT 1504596 23 100.0 51 ....................... TACGTTTCTGCTAGGTGGTTCATAATACCTTGACCTACAGATAAGAACCAT 1504670 23 100.0 49 ....................... ATTTTGGTATCCCTAAGGACTCTTGCATCTTTTTTGCGATAAGAACCAT 1504742 23 100.0 49 ....................... ATCTCACGAAGTCTATCCATAATAGCAGATTTATTACGATAAGAACCAT 1504814 23 100.0 50 ....................... TTTCTTCTACTTTGTTTTGGTCAACTTCATTGACCGTCGATAAGAACCAT 1504887 23 100.0 50 ....................... ATAATACGCGTTCGTTTGAACCTTTTTTTCTTCTTTTAGATAAGAACCAT 1504960 23 100.0 48 ....................... CTAATCATCCATTTCGTCTATGATGTAGGCTGTTTTGATAAGAACCAT 1505031 23 100.0 50 ....................... TACCTGCCTAAAATCTATATTCAGTTGTCAAAGAACATGATAAGAACCAT 1505104 23 100.0 50 ....................... TTAGAGGTTCAAGGATTCAAACGGGAAGATGATGAATTGATAAGAACCAT 1505177 23 100.0 49 ....................... TTTCGAGACTTTCTGCTTCATCGGAAAGTTCTTGCCAGATAAGAACCAT 1505249 23 100.0 49 ....................... CAACCTGCCTACTGATGAGACAAGCCGCAACGAAAAGGATAAGAACCAT 1505321 23 100.0 47 ....................... ATCAGACCAGATGAGATTATGCGGCCATTCAAATTGATAAGAACCAT 1505391 23 100.0 55 ....................... TTCATGCCTGCTTACCCATGTATGAACACCATGGGAGTAAGTTGATAAGAACCAT 1505469 23 100.0 53 ....................... GTGTCAAGATTGACTTTACGTAAAGTCTGCTGTTCTACAATGATAAGAACCAT 1505545 23 100.0 50 ....................... TTCTTGTTCAAGCTTTAACTGTTCTTGCATCGTTCCCTGATAAGAACCAT 1505618 23 100.0 51 ....................... ATCTGCTGGCTTGTCGTGGTCAATCAAGTTGACAGAGGAGATAAGAACCAT 1505692 23 100.0 51 ....................... CTGGCGGTGTAGAGCTTACGGGTCTGTGAAGACCTTGCGGATAAGAACCAT 1505766 23 91.3 0 .............A........A | T [1505786] ========== ====== ====== ====== ======================= ======================================================= ================== 35 23 99.8 50 AATCCCCGTAAGGGGACGGAAAC # Left flank : TTCCCCTGTGAATCGCCAACGCATGGCTTATAAGCGATTGAATCAATGGATTGGAGAATCATTGTTGATAAACCTGTGATTACTGCATTATGATCATGTGCCGTTTGTCATACATTCCGGCTATGCCTAGAATTCGTGCGGGACGCCCTTTGGGCTAGGCGTCCCCTACGAAATCGCATATAGGCGATGGAAAGGAACTCAGACCGCAGCCCATACTTGTCTAATGGCAGATCTTTACGAATCATGAACTATAGTTTTTGATAGACTTATGATATAATATAAATTAGTTAGGTAATACCGTATTTATGCGCCCAACTTGCTTTTTGAAAACATAAAAAGAATCATTCCGCCCCGCTGGCTTAAAAATCAGCGATAGGACGATTTTTGAAAATCATTTTCCACAAAAATGTGAAAAATGAGGAGAAAAGAAAATCCGCCCCGCAAAAGGCATTTTTGATGGCTCTATGAAGCCATTTATAAGGGGTGCGGATAAGAACCAT # Right flank : AAAAAGCAGTCTAATTTTCGTGTTTTCCTTTTTTGTGGAAAACTTTGATAAATTAGGCTGCTTTAGGCAGATAATGTATAAAAAAAGAAGCTGTCGTATTTGAGCTGTGAGCTGACCCCCAATAGTTAGATGTTAGGTCTAACAATTGGGGGTTACATCAACTTCTGACCGTCAGCCCCCATAAGAACTCACAGGTCATCAATGAAGTCGGCCTGGACATCGAAGACCAATACGGCTACGCTTATTTGCCGACGGATTTCAAGAAAAACAACGGCTTCCTTACATCGACGAAAATGACCGAAGCCTACCACCTCTACCGCCAGCCCTATTGCGGTTGCATTTTCGGTGCCCGCGACCAGGGCCTGGATTTGGGAAAAATTCGCCAAGATGCAGAAGCCTTTTTGGCCCAACAGGAATCGACCGTAGGGGGATAATTAGCTGGAGGAAGATAAAAAGAACTGACGCAAGCTTAGGTAGAATCCGGCTATTCATACAAAAGG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1758457-1761039 **** Predicted by CRISPRDetect 2.4 *** >NC_015873.1 Megasphaera elsdenii DSM 20460, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1758457 32 100.0 33 ................................ CCGTTCCTTACAGGCTATGCCGCCCTCTGCTAC 1758522 32 100.0 35 ................................ AAAGATACCCAGTATCCCCTGGCGGACATCAACGC 1758589 32 100.0 36 ................................ CGGAAAGCGATATCTTTGAAGACGTCCCGTCGGCCA 1758657 32 100.0 36 ................................ AAAGTTGATGCCGTAGCTGATGGCGCCCAGGCCCAT 1758725 32 100.0 35 ................................ ACTGGATATATCCTTGAAAGGCCAGCTGGTCCTGG 1758792 32 100.0 35 ................................ TCGTCAGCCGCGGCTTGTCTGAGAGCCGGGAAAAG 1758859 32 100.0 36 ................................ CAGGAAGATGCCCTGCGGTTGTTCCGGGCCTGCCGC 1758927 32 100.0 36 ................................ CCGATATGGTGAAGCGGGCCAAGGAGTTGAATATGC 1758995 32 100.0 36 ................................ GATGAGGTCCATCTGGTCGACGTTCATGCCGGTCTT 1759063 32 100.0 34 ................................ CTCAATGGGCAGGGCATCGACGTCGGCCCGCAGG 1759129 32 100.0 33 ................................ AAGCACGTCAGCCCGGCTGGGGCCGCCGTCGCC 1759194 32 100.0 35 ................................ TACAGCGGATATGAGTACGCGGCAGTTGGCGACCC 1759261 32 100.0 36 ................................ ATGCTCTCTGCTGCTTCGACGATGTAATCAAGGGCT 1759329 32 100.0 36 ................................ AAGTTTTGCTAACCACTGCTCATAGACACGAATCTT 1759397 32 100.0 34 ................................ CGGTTCGGGCTGTTTAGTGGTTGCGGTGGCCGGG 1759463 32 100.0 35 ................................ GCATTGACATCTGTAAAAGGGAAAAACTGGCTTAC 1759530 32 100.0 35 ................................ TTCACGGCGCCTGTGACGCCATGCCATGCCTTAGA 1759597 32 100.0 36 ................................ AATATCAAACAGAACACGGCTGCGGCCTGGCTGGAA 1759665 32 100.0 35 ................................ ATAATTATCATCTACAAGGCACTGCTTCTGGGTAT 1759732 32 100.0 34 ................................ TGAAACCATGACGGATTTCCTCACAGATGCATAC 1759798 32 100.0 35 ................................ TGGTTGGCTGTGATGCTTGAAGAAAGCGGCACGTC 1759865 32 100.0 34 ................................ AGTTGAAGTACGACTTTATCCGAGTCTTGATGAA 1759931 32 100.0 35 ................................ CCGTGTGCGTCCGCCGGATGAGATTTCCGCGCCGT 1759998 32 100.0 35 ................................ GTTGCTGATAAAAGCTAGTTCCACTAACACAGCAG 1760065 32 100.0 36 ................................ ATCGGGCCAGGGCAAGAAGAGCTGTCTTTTAAACTG 1760133 32 100.0 35 ................................ ATGAGGTAGACCCTTTTCATACGACCGTAAGCATC 1760200 32 100.0 35 ................................ GAGGACCGCGGACGACGTTTCACGCGAAATCCGAT 1760267 32 100.0 36 ................................ GCAAGCCGGGCAGATCTGTGTTTCCAGCCATTTTAC 1760335 32 100.0 34 ................................ GGAACTCATCCAGGAAGACGCCGGTATCGTCCCG 1760401 32 100.0 36 ................................ TGGGCAGTACTGATTGGCGTCCTGGTATCGGCCGCA 1760469 32 100.0 35 ................................ CTTGCGGGTCACAGTCAATCATGAGTACTTGCGGT 1760536 32 100.0 36 ................................ ACGCTGGAGGATTTAGACGGTCGGACACCCGAACAG 1760604 32 96.9 36 ........T....................... GTCGGCATGGCCGCAGATGCCCTCGACGCCATCTGC 1760672 32 100.0 34 ................................ TACTGGCGTACTTTGAATAAGCGACAAATCACAT 1760738 32 100.0 35 ................................ GTTGCTGATAAAAGCTAGTTCCACTAACACAGCAG 1760805 32 100.0 36 ................................ TCCGATGCCGTGGCTAAGTACCTCGACCGGATTGGC 1760873 32 100.0 36 ................................ GCTGTCTACCATCTCCCATAAGTCAGCACCATTGAC 1760941 32 100.0 35 ................................ TTGCTGGTTGTCGCCGAAGCTTTTATCCGGCTACT 1761008 32 96.9 0 ..................C............. | ========== ====== ====== ====== ================================ ==================================== ================== 39 32 99.8 35 GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Left flank : ACTTAAACGAAAACTAAGTCGCGTCGATACTGGATTTTATGGTATAATATAATTGTCGTTTTTGTGGATTCCACAGGGACGTGGATTGAAATTGTAACGTTGAATAGTAAGTGAGGTGGAAACCTGCCGTATGCTAACCCTGCGGCAGGTTTTTTCTATAGCTATTAAATTACTAGTCAACATTACAGAATTATATATTGATTTTCTATGGTGAAAGAGGTATACTAACCATATAAAATAGATTACCGAATTAAGACAGGGCATCTTGGCTATCCGTATATGTAACCAGGTCATACCGAACTCTGTCAAGACTGATTTATAGAGAGAAAGTGGTGCGAAGCGGCATCACACATAAAATATATCGGGGTTCCGCGCAGGCCTTACTTTCTATAAAATTAAGCAATATCCAGATAATTAACTCAAAAAATTAGATTGGCTTTCTCTCAGTTCGCAATATAGATGATAGAAAAGCAGGCGATGACTGAGTTAATTTGAAGACT # Right flank : TCACATGGAGGCTCCGCCTTGTACGGATACTTACAAGTCTCACCTTTCATGGGAAAAAAGAATGTTAACTTGCTTTAGATTGTTCGGGCAAAATTACTGCGGAAGAGAATCTTCAATGGTGAGAATCCGTATTGGAATGGGGAAATGTTTTTATGGATCAGCAGTCGAATTTTACAATATAATGAGGGGGTGTCTGTTATGGAATACGATGAAGATGATTTTTTGATGATTTCAGGGATACAACATTTTTCATTTTGTCCTCGACAATGGGCCTTGATTCACATCGACCAGGTTTGGGATGAAAACATGAAGACGATGGAAGGCAATATTATCCATGAAAATTGCCATAATCCAGATTTTATAGAGAAGCGTGGTGAAATTCTTATTTCTCGCGGGATTCGGATTGCTTCAAGGACTTTAGGTGTAACTGGACAATGTGATGTGGTGGAATTTCACCGGGATGATGGTGGAGGGCGTTTATATGGACATAATGGCTTATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1943916-1942268 **** Predicted by CRISPRDetect 2.4 *** >NC_015873.1 Megasphaera elsdenii DSM 20460, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1943915 28 100.0 32 ............................ TGTTATTGCCGATTATTCCGCAAATGGGCAAC 1943855 28 100.0 32 ............................ AATCCAAGATTCCGTTGCGGTATATTCTGAAC 1943795 28 100.0 33 ............................ AAATACGTTGTTGATGTCGCATCACTGCATAGC 1943734 28 100.0 32 ............................ TTTCAAGTACTTCCGACTGGAAATCATGTTCA 1943674 28 100.0 32 ............................ GGTGCAAAGGTCCGCGGGTTCTCGATAGTAGC 1943614 28 100.0 32 ............................ AAAGCCGGTTGATTTCTCGAGCCGTGAAAGGC 1943554 28 100.0 32 ............................ ACAAAGACCGATAAAGTAGTCCAGTAAGGATC 1943494 28 100.0 32 ............................ AGAACCAGGAGAAAAGTGGAAGCACTTCAAAG 1943434 28 100.0 32 ............................ AGATAAATGCCACAATTAGGAGCTTCTAGGCC 1943374 28 100.0 32 ............................ TGCTAAGGGGTACTGGTATATGTTGCTGACTT 1943314 28 100.0 32 ............................ TTAAAGTCGGTGCTTATCACTATGACTACAGC 1943254 28 100.0 32 ............................ TATGGCGGCTGTTACCGTCGGCAGGGGTCCAA 1943194 28 100.0 32 ............................ GCAGGCCGACCCCGTGGCAACGACCGTCAACG 1943134 28 100.0 32 ............................ ATACAACTCATGACTGCCGGCATACAGTGGCT 1943074 28 100.0 32 ............................ AGTTCCGCCACAATGTCCAGATGGCGCATGAA 1943014 28 100.0 32 ............................ ATAAGCGGTTGATTTTCTGCCGGCTGAACGTA 1942954 28 100.0 32 ............................ TCTATCGTCATAGGAATGAATACAGCAAAAAT 1942894 28 100.0 32 ............................ ACGAAAGGACGGCGAAAAGAATTGCTGGACCA 1942834 28 100.0 32 ............................ TGTGAGATGAGAGTCAGCCCGGGGTCTAACAT 1942774 28 100.0 32 ............................ AAAAGGGAAACGGATGGCTGCACCCAAACATT 1942714 28 100.0 32 ............................ AATTCGCAATTAAGCGTGAGATGGCCACGACG 1942654 28 100.0 32 ............................ AGAACTTCAAAGCTTGGCTTTCGTTTGCCATT 1942594 28 100.0 32 ............................ TGCATGATGAGCATGGACTTCATACCGTAACC 1942534 28 100.0 32 ............................ TTCTCAGCTTAGGGAGAAGCAAACGAACCCGA 1942474 28 100.0 32 ............................ TGTCCCATGTCACTAAAGCCATTGTCTGCATA 1942414 28 100.0 32 ............................ TGTACCATGACCGGTGTTCCCTTGAAGACGGC 1942354 28 100.0 32 ............................ ATTTTGTCCGAATATGTTGTAGACAGCTCTTT 1942294 27 92.9 0 ......................G.-... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.7 32 GTTATCTGCCGCACAGGCAGTTTAGAAA # Left flank : CTGACATTCCTCAAGCCTTGCGTTTCTTGCAGGATTACATCCATCTTACGGCGATTCGAGAGGTGGCCGCTCCTCGTATCAAGGGCTATGCCGTATATCGCCGCTATCAACCGGACAGCTCCCGCTTTCGAAAAGCCAAACGTTATGCAAAGAGAAATGGTATATCTTATGAAAAAGCCTTTAAATTGATGAAAACAAAAAAGCCTAGACGACTTCCGTACGTGCAGCTGAAAAGCAAAACGACTCAGCAGAAATTCAGCCTTTTCATTGAAAAAATAGAAGCTCCTGCTTGTGAGGGTAATTTTAACGCCTATGGTCTGAGCCAGCAGGCGACAGTACCGGAATTTTGAGGAAAATCATGTTTGATTGCCCCAAAAATTAATAAGTATCTTAAAATCAAGGAAACAAGCGGATCTTTGCCGTCTCAGAAAATTTTTGGTAAAATGAAAAAGAACGCTTGACAGTAAGTGGCTGTGCGAATTTGCGCATGTTGTCCTACA # Right flank : TTTACTGTTGGATAGAGGTGGTTGTATGAAACAGCAAGTCGAGACCGCAGCTTTGAAAGCTATTTTACATTCTAAGCGGGCGAATATATATTATTTGGATAAATGCCGGGTCATGCAGAAGGATGGACGGGTTGTCTATTTGACGGAAGGAAAAAAGGAAAATCTTTATTGGAATATCCCTATTGCGAATACAACGGTTATTTTGTTGGGAACCGGCACTTCTATTACGCAGGCGGCGATGCGGCTTTTGGCGAGTGCCGGCGTCCTTGTTGGCTTTTGCGGCGGCGGGGGAACTCCTTTATTTGCAGGCACTGAAGTGGAATGGCTTAATCCGCAGAGTGAATATCGGCCGACAAGCTATGTACAGGGCTGGCTTTCATTTTGGTTTGATGAAGCCCGGCGGTTGGCAGTAGCAAAACACTTTCAACAACAGCGCTGTTCATTTTTGCAGCGCACTTGGGAGAAAGACCGGGAACTTTCCGATTACGGTTTTTATTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGCACAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 1948608-1947798 **** Predicted by CRISPRDetect 2.4 *** >NC_015873.1 Megasphaera elsdenii DSM 20460, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1948607 28 100.0 32 ............................ ATCATCATGTCCCGAATGGCCATACAACATGG 1948547 28 100.0 32 ............................ AGCCGCAAAACGCGCCCACAACGGCAAATAGC 1948487 28 100.0 32 ............................ TCTTTGATGCAGCGGATCAGTCCTCTTTCATC 1948427 28 100.0 32 ............................ ATTACGCTCACCGCCTAAGCAAAGCACGTATC 1948367 28 100.0 32 ............................ GACTTTTCGGCGACATTCTTTCGGACATTCTT 1948307 28 100.0 32 ............................ TTCTGATGGCACCCCTTGCGGTGCAGACGAAC 1948247 28 100.0 33 ............................ ATGTAGTACAAAGGAAAACTTAAGAGAAAACAT 1948186 28 100.0 32 ............................ AGCCGGTGTCACCACATAGTGGATGCGGCGCC 1948126 28 100.0 32 ............................ TTATTGGGTGCGAAGCCTCGCGGTGTACGCCT 1948066 28 100.0 32 ............................ ATAGGCAAAATCCCAGCCCGGTACATCGACAT 1948006 28 100.0 32 ............................ ATTATTCGAGCCGCCGCCGACAGCGATACGGA 1947946 28 100.0 32 ............................ CATAACTGTATCGGTTGGTTTGTCTGTTAATC 1947886 28 100.0 32 ............................ TATACCATGCTGAAAGCGTGGAATACAGGCCA 1947826 28 92.9 0 .........................T.T | A [1947804] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GGTATCTGCCGAGTAGGCAGTTTAGAAA # Left flank : GTACGTTGAAGTGGTTCTGGTAACCGGATGTCATGCTGTCGTGGTTGCCGATGCTGCTGGCTTCGGGCAGATTGCGCAGGGCTGCGGCCGAAAGGTAAGCGGCATACTGGATTTCCTGTTCGTTCAGCTTGGTTGCCGACTGGTCTTCCGCCGGCTGGTTGATTTGGTCGCCAGGAGAGACGAGGAAGTTGATTTCCGGATGCTGCGCGAGGGCGCTATTAAGGGTCTTGTTCCAGTTAGTCTAGGCGCCGTTTGTAAGAAAAAAGAACGAAAAAATGTCAAAAAGATGTAAAGAAATTACTGAAAAAGCTGCGGCACAAAATCTGGAATCATGTAATGATTAATAGTCACTGCAACCTGCATAAATTTTACCAAAAAAATAAGATGTTTTTCAGATGCAGGAAACATGCGGCCTTATAAGGCTATTTTGATTTTTGGGGAATTTTGTTTATAAGCGTTGCAGTTAGGTAGCGACGCGGTTCAACGTATGATATAATACT # Right flank : ATATTCCTTTAAAAGATAAATAATATTGAATGGGAATTTCAAATGTGGTATAATGAGAATAATTAATTCGGTATTTAATATAAGGAGGCATTTTCTGTGGGAATATTTATGGATTATGTCGTAGAAAATTCAGCGAAGAAAAAGAAAACACATAATGCTTGGCTGCAAAGTGTGGTTGATCGTATTCCTTCTTGTACCTTGTCGACGCATGTCGGTAAATTTACGAATCCTGAAGTAAAAGTAAATATTCTTGATAGAGGACAGGGAACAAATAGGGAATATGTGAGTACCGATACGGTGACACATGATATTGATATCGTTGTTTCTTCGGCAGCTTATTTAAGTACGGCGAGTTTATTGATGCTGCCTTTAGAAGATAGACAGTTGGTGCTTCTTCATCTCAAGCAGCGTGATTTAGCATTAAAAAAAGATTTCACTTCTCTCGGTATTGATTATGAAAAAGTTTGCACAGATGTTGATGGACTTTTTCAAGCCGCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTATCTGCCGAGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTATCCGCCGAGTAGGCGGTTTAGAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2193776-2190080 **** Predicted by CRISPRDetect 2.4 *** >NC_015873.1 Megasphaera elsdenii DSM 20460, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2193775 32 100.0 36 ................................ TAAAGTTGTCTTGATTCTTAGTTTATCATGGATAGG 2193707 32 100.0 36 ................................ TATACATCAGGAGGCTCTAAATTAAATGAAACGAGC 2193639 32 100.0 34 ................................ CTGAATGGGACCTGGAAAAATGCGTCCAGTGTAC 2193573 32 100.0 35 ................................ AATGAAACCGATGAAACGGTCAACAAGAAGACCAA 2193506 32 100.0 37 ................................ GGCATGGACACGCTGACGGCGGACGGACCGGCCAAGC 2193437 32 100.0 35 ................................ AATGAAACCGATGAAACGGTCAACAAGAAGACCAA 2193370 32 100.0 35 ................................ CCGGCAGAACATCTCCTGACCAACGACGATATGGA 2193303 32 100.0 35 ................................ ACCTTCCTCAGCAAGGAAGAAATCGACGCCCTGGC 2193236 32 100.0 37 ................................ ATCGGCTGGATCACGGGCATCGAAGGGGTCTACTTCC 2193167 32 100.0 34 ................................ TTATAATTACAACGCAGAGGAGTAAGGTGACCAC 2193101 32 100.0 35 ................................ CTCATGGCTTGCGACAAGGCCCTCGTTGAACCGTC 2193034 32 100.0 36 ................................ TTTGAGCCAGAAAGATTATGCGTCGGGACAAATGGG 2192966 32 100.0 37 ................................ GGCTTATGCCTGTGCCCGCGGTGCTGACCGCATGAGC 2192897 32 100.0 36 ................................ TGATCAAGGCCGCCGCGATTTGCAGGCCTGGTGGAC 2192829 32 100.0 35 ................................ ATATAGAACATCCTGAAAGAGATACTTTGGTCATC 2192762 32 100.0 38 ................................ GTGTATTAGTTAACGGTGCCGATGGCCGCATGGGCAGC 2192692 32 100.0 36 ................................ CAGCAGCAGCTGGGCGTCTTGCAGGACCGGCCGGAC 2192624 32 100.0 34 ................................ CCGGAAGTCGTCTACTGTGCCGGCAAGACCGTCC 2192558 32 100.0 36 ................................ ATCATCATGGCGACAATCGGCGTCCTCGTCGTCCTC 2192490 32 100.0 36 ................................ TCGCCTGCAGACTGAAGGACGGGGCCATCTGCGCCG 2192422 32 100.0 37 ................................ TGCATGTGTCCCGGTGGCGTCGTCGTCGGGGCGGCTT 2192353 32 100.0 36 ................................ TCGATTTCAATCATACGGGGATGAGCATCGTCGAAA 2192285 32 100.0 35 ................................ GCATGATACGCTGGAAACGTATACGGCTGTCAGTG 2192218 32 100.0 36 ................................ CAAGACAGGCGTCATCTTCAAGGCCGCTATCGATAC 2192150 32 100.0 34 ................................ ATTTTCCTTGTGGACGGCTTCGGCTGTTTCCTGC 2192084 32 100.0 35 ................................ AGTAAAAAAGAAATCCGGTCAAATTTTGTTTACGG 2192017 32 100.0 36 ................................ CCGATGCCATCTGCTTCGTCTCGGAAAAGGGGCGGG 2191949 32 100.0 36 ................................ TATATACGCGTAAAACGTATAACCAAAGCTATATCA 2191881 32 100.0 33 ................................ CCAGAAGGCAGCCGCCGAAGGGAGGTCAGTCCA 2191816 32 100.0 36 ................................ CTGTCGATGAATTGATCAAAACGTTGGAAAAGCTGT 2191748 32 100.0 36 ................................ GACACGGCGCACGGATACGCCGGCCAGGTACATCTC 2191680 32 100.0 38 ................................ TGGCCATCGCTCTGAGCCTGCTGTGCACCGGCCTGGGC 2191610 32 100.0 36 ................................ ATGCGACACCACAAGACGCCGGCAGTGGCACGGGAA 2191542 32 100.0 35 ................................ GGTAATGTCGCAGCGCTGGTCAAGTACGCGCTTGA 2191475 32 100.0 34 ................................ TTACAAAGAAGCGCTGAAAGACGCTCGTAAGCAA 2191409 32 100.0 36 ................................ GTGGAATAGCTATTACGGTTTCCCCCAGCAGTCGTG 2191341 32 100.0 36 ................................ TTGCGTGGCTTGACTACATGGACGAGGACGAAAAAC 2191273 32 100.0 38 ................................ GGACATACGGAGCCAATATTCGTCCTGGTGATTACTGC 2191203 32 100.0 36 ................................ GAACGTCTCCGCAGGCTGAATGACCCGAAACTTACT 2191135 32 100.0 36 ................................ CAGCTTAGCATAATGCCAATCGTCCAGCACGTGCTT 2191067 32 100.0 36 ................................ AGAACGAAGTGCAAAACCCTGGCCGATTACATTAAC 2190999 32 100.0 36 ................................ GCTGTATCAACGAAGAACTGGATATCTTCCGCTGTC 2190931 32 100.0 36 ................................ AACGCAAACTTCGAAATTAATTGCTTGAAGAAATAC 2190863 32 100.0 35 ................................ GTTTTTGCAATATACGTCGCTATCCCTCCTCGTCA 2190796 32 100.0 37 ................................ GTGAGGTGGCTAGTCAATCCGCTGATTTTCCCGGCGC 2190727 32 100.0 35 ................................ GTGGATTCAAAAAGCAACTAATATCGACACTAAGC 2190660 32 100.0 37 ................................ ACTTACATGGATATGATAAATACATTGATGAAGAAGC 2190591 32 100.0 37 ................................ TTTGTAGCTTAAAATTATAGTCAACTAGAATAGAGGC 2190522 32 100.0 37 ................................ TTCTATTATTATCTCTTTTATCTCTTTACTCTTATGC 2190453 32 100.0 38 ................................ AAGTAGGATGCGGAACCGTTCGTCTGAGATTGTGGAGC 2190383 32 100.0 36 ................................ CGCAGCAGGTTATCCGGCTGATTGTATCGCCGTCAG 2190315 32 100.0 36 ................................ TTGTATCAAGATGAAAAGAAGGTGGACTAATTATGC 2190247 32 100.0 37 ................................ ATCGCCCCCATTTTGGATTGTCAGCTCATAAGTCAAA 2190178 32 100.0 35 ................................ AATGAAGCTGTCTAAGAGCTGCTGGCCGGCCTTCT 2190111 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 55 32 100.0 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : AGACGGCTATGTATCAGCCAACCTGGCACGGAAAGTGACCGGTTTCAGTGAAGACGATTTACAGTATTTATGGAAAGCCATCATTAATATGTTCGAATACGACCATTCCGCTGCCAGAGGGAATATGGCTGTGCGCGAACTCATCGTATTCAAACACGATAGTGAATTGGGAAATGCTCCAGCATATAAACTTTTTGATACTGTTCACGTCCAGAAAAAAGAAGGCGTCGTCGCGCCCAGAAACTATACGGACTATGACGTAACCGTAGATGAAAGCAAAATCCCGGAACACGTTACGTGTACCCGGATGATTTAAACGTAGGAAAGAGGGGGTGCGAAGCCGTATCACACATAAAATATATCAGAGCTTCGCACCCGGCTTGATTTCTATAAAAATAAGCAATACCCGGAGAATTGACTCAAAAATTGAACTGCTATTCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGCAGGCTC # Right flank : AAAATGCATCGCTCCTCAGGAACGTTCAGCGGGAAACGAGTCCGGCGCGGCCTGTACCGTTTCGCCGACGGCAGGATGGCTAATGCCGACATCAACGGCGCCGCCAACATACTCCGCAAAAGTAAGCAGAACCTCGATTTCGAGGGACTGTGTAAGGGGCTTTTGGACAGCCCTTTGAGAATAAGGCTATCCTGATTTCAGGAGGAAACTTAAACAGCAACCTTCTCAAGAATCTCTCGCTTCTATAAGCGGGAGAGGTTCAAAGGCAGTATTTCAAATCTTCAAATCCGATTCTGCATAGAGTGCCGCATAGCCAGCCAGGGCGATGCGGCCTTTTTCTATGTGGCAATAGAGTTCGCCGCCCCGTTTCGAGGCCTGGTAGGCGACGAGGTCGGTTTTGTCGAGTTTGGCTGCCATGACGGGGATGATGTGGCAATGGCCGCTGCCGCAGACCGGGTCTTCCGGGACGGCGAGTTTCGGCGCAAAGGACCGGCTGACCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //