Array 1 12081-13369 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVY01000425.1 Pseudomonas aeruginosa isolate A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12081 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 12141 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 12200 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 12260 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 12320 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 12380 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 12440 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 12500 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 12561 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 12621 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 12681 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 12741 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 12801 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 12861 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 12921 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 12982 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 13042 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 13102 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 13162 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 13222 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 13282 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 13342 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23773-22243 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVY01000425.1 Pseudomonas aeruginosa isolate A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23772 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 23712 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 23652 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 23592 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 23532 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 23472 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 23411 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 23351 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 23291 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 23231 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 23171 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 23111 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 23051 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 22991 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 22931 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 22871 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 22811 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 22751 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 22691 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 22631 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 22571 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 22511 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 22451 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 22391 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 22331 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 22270 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //