Array 1 188633-185076 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007515.1 Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 188632 37 100.0 36 ..................................... TCCTCTTCCAGGGGGCGGGGCCTTCTCTGAGAGGAG 188559 37 100.0 35 ..................................... CGCGACCTTCGCCGCCTCCGACCGGCGGCCCTCGT 188487 37 100.0 37 ..................................... GGCTTCGCCGGAGCGCCAAAGGGCGATGGGCGAGAAG 188413 37 100.0 39 ..................................... TAACCGCCTCGTAGACGGCCCGGAAGCCCTGCGCCCCGC 188337 37 100.0 36 ..................................... CCCGATGCGATAGGCTCTTCGGGCGGTAGGCGGGCC 188264 37 100.0 36 ..................................... ACCGAGGAGTTGTTGGCGAAGTGAAAGACCGGCACG 188191 37 100.0 35 ..................................... AGAAGCGCGTTCAGGGTCTCCGGGGGCACCGTCAT 188119 37 100.0 36 ..................................... CGAGGCAAAGACGCGGAGGTGAGAATTGCCAGCGCC 188046 37 100.0 36 ..................................... TTTCTACATTCCGATACGCACGTAACGCTTTACATA 187973 37 100.0 35 ..................................... CCTTCAAGGCAAACAGAGGGTTATCCGTGAGATCC 187901 37 100.0 36 ..................................... CAGTTGCAGGACCGGAGGCCGGGCGGGTGATCGTGT 187828 37 100.0 37 ..................................... TTGCTCAGGTCCATAAGCCGCGAGAGCCTGTCAGCGA 187754 37 100.0 43 ..................................... TAGGCCCGGTACGTCCCGCTCCCGGTACATATTGGTGCGGATA 187674 37 100.0 39 ..................................... TCACGATAGAAACGCAGCTCAAAACGGTAGACGGGAAGA 187598 37 100.0 35 ..................................... TCCTCCCCTCGGTTCCCACCCAACCCGAACCTCTC 187526 37 100.0 37 ..................................... GTCAGGCGACTGATGCCCCATGCGAAGAGGGCACCAG 187452 37 100.0 36 ..................................... CGGGACGCCTCGTTGCTCGGGTCAGCAAGCACTACG 187379 37 100.0 40 ..................................... AGGATGCCGACGAGCCCGGAACCTACCTCCTCCGGGATAA 187302 37 100.0 37 ..................................... CAGATTCAGGAAATCTTGGGACGGGTTTTCATCCGGG 187228 37 100.0 36 ..................................... CGAGAAAGGCGACGATGCCGACGGCGGCTATTGCGG 187155 37 100.0 37 ..................................... GAACCCCTCGGCGGTCAGTTCCGAGCCGTCGATCGCC 187081 37 100.0 37 ..................................... TCACCCCGTACTCCGTCAGGCGGTAGCGGACCGTGAG 187007 37 100.0 34 ..................................... GCTACCTCGACCGCAAAGGCGTTCCGAATGCGGA 186936 37 100.0 34 ..................................... ATTCGGGTGAAGTCCCGCCGCGCCAGCCGGCGCA 186865 37 100.0 34 ..................................... CGGAGATCTCCGAGGCGTCGGGCTCGGGGCCGTG 186794 37 100.0 36 ..................................... GTTCGTCGTCTGCCGCTAGCTGTAGCATGTTCAAAT 186721 37 100.0 39 ..................................... TGTAGCTTTTTCCGTCCGCAGCCCGCCGTCCCGCAACCG 186645 37 100.0 35 ..................................... CCTGAATGGTTGATCGAAGGGTTTCTTGCGCAGAA 186573 37 100.0 36 ..................................... CGTTGACGATCTCGACCAGCGCGAACCGGAGAAGAC 186500 37 100.0 36 ..................................... CGGGTTGTGCCCTCTCTCATGGCTCGTGGCGGCCTG 186427 37 100.0 35 ..................................... GTAGGAGAACCCGACGCGTTCCAAGAACCCGTTTC 186355 37 100.0 35 ..................................... CGTTGTGAAGCGAGAACTGAATGTCCTCACGGATA 186283 37 100.0 36 ..................................... CTCTTCGCCGTCGTAGACGTAGAGGTTGCCGCTTAC 186210 37 100.0 36 ..................................... TGGGGGGCGCGTCGAGCGAGGGACAGTGGCGCAATG 186137 37 100.0 37 ..................................... TAGCGTTGCCGCTAGCCATCTGGCCCCACGTGCCTAT 186063 37 100.0 38 ..................................... AGCGGGTCTTTGGTGTACTGGACGTTTCCCCACGACGT 185988 37 100.0 37 ..................................... GTACGTCCCGTTACGCTGATCCCGCCGGAAAACCTGT 185914 37 97.3 36 ......A.............................. ACGAGGCCATTTCACGTTCTAGCTCGTCGGCGTCAT 185841 37 100.0 35 ..................................... CGCGCCTTATGCCGTGAGCGAGCGGGCGAAAAACC 185769 37 100.0 37 ..................................... CGGCAGAACGAGCGGTACGCACAGACCAGTTAGGCCC 185695 37 100.0 37 ..................................... TATAACGAATGTCAGCTAGCAATCTACCGTCTTCCCC 185621 37 97.3 35 .............................G....... CGACCAGACCGTCAATCCGGACTAGCAGGTTTTGA 185549 37 100.0 35 ..................................... GACGGGATCGCCAACCGTCAGCGGTCCGGGGGCGT 185477 37 100.0 37 ..................................... ACCTGTTGCGCGGGGAAAGCGTCAAGCCGCTGGCCGT 185403 37 100.0 35 ..................................... CCTCTATCTCCCAGACCGTCTCGGCGGTGGACGAG 185331 37 100.0 36 ..................................... ATACCGTCGAGCACGGTGTTTCGGGGCTGGACTCTT 185258 37 100.0 34 ..................................... TCGGACGGGAGATGCGCCCCGGCGGGAGGTTCGT 185187 37 100.0 38 ..................................... CCCGACCCCGGCCGTAGCGGTCTAGAGAGGCGTTTATG 185112 37 94.6 0 .........T..........................C | ========== ====== ====== ====== ===================================== =========================================== ================== 49 37 99.8 36 GTTGCAGACCATCTCCCGCTAGATAGGGAACTGAAAG # Left flank : AAGTCGATCTTCGCGGGAGAACTGTGCATCTTGTAGAGGTTCTTCGTCTTTGTTATCCCGAACCCGGCCTCGCGCAAGATCCCCAGCCAGCGGCGGATCGTCCGCTCGTCGCGCCGGATCCCTTCGTCCGCAAGAGCCTGCTCTAGCTTTCTCCTCGAAGCGGGTCCCTCGGACAGAACCCTAAGGAGGATCAGAGTCCCCAAAGACGCCTCCAAGAGTCCCCCTTTCGCAAACCGCTGTAGCTAACTGTAGCAACCCGGTTCCCTGCAGCCTTCGACAACCTGCCGGGATAGACGTATCGCCTGCAAAACCTCGCAAAAACCACCTTCGCAAGCCCCGGGCCCACCGAGGCAGAAAGCCCGTTTGCGAACAATCGCCGAGCGCAGCACCCTATGCTAGCATGCGTCTTACACCCTCGATCCGCTGAGAAGCGGATCTTGACCCTTGAAAACCACCTCGAACCAGGTGGAAGATACGGCTTACAATGCCTTACATGCTCG # Right flank : CTCACCGCTCCCCCCGCGAAGGGTTCTTCGGCGAGGGTCCGGCTACGGGAGCTCCCCGGCCCACTCCCGGTCGGCGATGAGCCGCGCCCAGCCGAGCGGACTCACGTCCAGACCGGCGAGGATGCCAACGAGGGGGATAAGCGCCGCGAGAGCGAGGGTCGGAAAGAGCATCAGCCAGTCGGTCTCGAAGCGGGTGCCGGGCCGCTTCTCCTGCCGCCCTTCCTGCAAAGAGCCGTCAGGGGGCTTGCCGAAAAATGAGTTGTAGAGGATGGGCAGGAAGTAGACCGCGTTCAGCACGGTGCTCGCCACGAGCACCCCGATCGCCCAGCTCTGACCGGCCTGCATCGCGCCCACGCCGAGGTACCACTTGCTTATAAAGCCTGCCATCGGCGGGAGACCGATCATGCCGAGCGCCGCCACGGTGAACGCCCCCATCGTCCACGGCAGCCGCCGGCCGACGCCGCCCATCTTGCTTACGTGCTTTATCCCCACGGTCTCCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGACCATCTCCCGCTAGATAGGGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 1147071-1149653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007514.1 Rubrobacter radiotolerans strain RSPS-4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1147071 37 100.0 34 ..................................... CGTCGCTCGCTGCGGCGGTCGGCTTCGAGCGGCT 1147142 37 100.0 36 ..................................... AGGAGCTGACGCCGGACGAGCTGGCGCGGGTGCGGG 1147215 37 100.0 35 ..................................... TTTGAGATCGTACACGTAAGCGCTATCAAGGCCCA 1147287 37 100.0 37 ..................................... TACCTCTGATGAGGGATACCTAGTGGAACAGGAGACC 1147361 37 100.0 38 ..................................... GGCGCTCAGGCTGACGGTCCTCGGGTGCGTGCTCGCCG 1147436 37 100.0 35 ..................................... GAGCTGATCGCCTTTCAGCGCGGTGTCTCCTACGA 1147508 37 100.0 36 ..................................... GGCATGAGACCGTCGAGGGAGAGCGTCGAGCTTGCG 1147581 37 100.0 35 ..................................... TCCTATCTTGATGGTAACGGTACCCCTGAGAGGGT 1147653 37 100.0 37 ..................................... TTTGCGTCGAGGATGGTCTCGGCGTGGTTCACCCGGA 1147727 37 100.0 35 ..................................... AGGGGAGGGGGTGAACTCAGTTTCAGCCGACGAAG 1147799 37 100.0 37 ..................................... TTCCTTGTTGGTCGGGACCGCCCGGCGGGGGCGCGTG 1147873 37 100.0 36 ..................................... GGCCAGCGGGCCGGTCCCGCGATGGCCGCGCTCGTG 1147946 37 100.0 36 ..................................... AGGTACTGTATCGCCACCTGCGCCGCGCCGCTCGTG 1148019 37 100.0 35 ..................................... GTAGACCGGCACGGCAACGAGGTCCGCTCTCAGGC 1148091 37 100.0 33 ..................................... ATCTCGACCCTGCGGACCGCCACGTCCGGCAGG 1148161 37 100.0 36 ..................................... GACGGGGAGCTTGTGCAGGCCGCCATAGAGCGCGGC 1148234 37 100.0 35 ..................................... GTCCTCGCCGGGCTGATGATGGCGATCCGCTACCT 1148306 37 100.0 36 ..................................... CCGCCGAACCACGGCGTAAGCTCTTCGGCTGTCGCC 1148379 37 100.0 35 ..................................... CGGGACGGCTCGCTGTGGTCCACACAAAAGACATG 1148451 37 100.0 35 ..................................... CGGGGTAAAGACGCCGCCGCGCGCCATGAACTGCG 1148523 37 100.0 38 ..................................... ACGAACTCCTCATACACCCACTCGTGCCCTACGCCGCC 1148598 37 100.0 37 ..................................... GAGATAGAGCCGTTCGCGTGCTCGGTCCTGCGCAAGC 1148672 37 100.0 38 ..................................... CACACTGAGTTCATAGACCGTTTCACCTACTACGGGAT 1148747 37 100.0 35 ..................................... CTCGTGAAAGGGCCGTCTATTCCAGGCCAAAAAAC 1148819 37 100.0 37 ..................................... TTCGTAAACCCTGAGAAGGACGTGTGGCTTTGCCGGG 1148893 37 100.0 36 ..................................... CCGAGCGGGGCGACGCTTACGTTCGCCTACATGGAC 1148966 37 100.0 36 ..................................... CCTCAAGCACCCGGCAGTGAACACCGCGGCCTCGAT 1149039 37 100.0 34 ..................................... TCCACCACGCCGGGGATGGACGCGTCGCCGGTCC 1149110 37 100.0 35 ..................................... TCTACGACATGAGGCGGCCCCGGGAGTAGTGCGGG 1149182 37 100.0 36 ..................................... ATCTCGACCGCGAGAGCTGCACGTGTCCGGACTACG 1149255 37 97.3 35 ....................................C CCCAGGTAGAGTGTTCGCCGGCGTCCTCCCTCCTT 1149327 37 97.3 36 ....................................C TTCGACCTCAAAGTCCCGGACCGCGGGGTGTGGACC 1149400 37 97.3 35 ....................................C GTAGACGACGCTCGCGTCTTCCTTGTGCCTGCACT 1149472 37 97.3 36 ....................................C TGTAGCGTCTTTGCGGTCCTCTCAAGCATCGAGAGT 1149545 37 97.3 35 ....................................C GTGCTGGCGGCGGCCGGGCTTATGATGGCGATCCG 1149617 37 94.6 0 ...................C................C | ========== ====== ====== ====== ===================================== ====================================== ================== 36 37 99.5 36 GTTGCGCCCGGCTTTCGAGTCGGGCGAGGATTGGAAA # Left flank : ACGGTCCTTGAACGTCCTTGTAACCTATGACGTAAACACCGAGACAAAGGCCGGACGAAGGCGTCTGAGACAGGTAGCCACGGTTTGTAAGGACTACGGTCAAAGGGTGCAGTTCTCCGTCTTTGAGTGCCGGGTGGAGGAAGCTGCCTACGAGGAGATGAGGCACCGGCTGATGAGGACCCTTAACCCGAAAGAAGACAGCCTCCGCATCTACCGCCTGCCTTTTCCAAGAGAGAAGCACGTCGAGGTCTACGGTCTCGACCGCTACACCTCCTTCGACGACCCACTAGTTTTCTGATCCCGACCTGCACCCGAACTCCCGATACGCGAACCCCGAGCGATGCCGAAACCCCCGGAGGTCCGCGCGCCGAAGAAACACCCGGAAAATACACAAAACCTATTCACCTTACGAAAAGAGTCAGCTTTAGACGGTCAAAGAGCCGCAGGGTCCGCGCAAAAACACCCGAGAACCGCGTAGATAAAGCGCGTATGATCGAGCG # Right flank : CGAACGGGTCTCCGCCGCCGTCCGGGTCTCTGTTGTTCTCGGAGAGGCGTCCGAATCGGTCAAGCCGGACGTCTCTCCGGGTCGTTAGAGAGCGTAGAGGTCGGTGAACTTCTCTTCCAGGTATTCGAGGTAGGGAGCGGCGGTGAGGGGCCGGCCGGTTGCGCGGGGGATCAGGTCCTCCGGGTCGTAGCGGCTGCCGTGGCGGTAGACGTGCTCTTCCATCCAGCCTCTTAAGGTCTCGAAGCGTCCGGTGGCGGTCTCGGTAGGTATTTCGGGGTGGTCTTCCAGCGCGGCCTGGTAGAGCTGCACGGAGAGCACGTTCCCCAAGGTGTAGGTCGGGAAGTAGCCGAAGAGCCCGGCCGACCAGTGGACGTCCTGAAGGACTCCGAGGGCGTCGTTCTCCGGGACGAGGCCGAGGTAGCGCTCCATCCTCTCGTTCCACGCGTCGGGGAGGTCGGAGACGGAGAGCGTGCCTTCGATCAGCGCGACCTCAAGCTCGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGCCCGGCTTTCGAGTCGGGCGAGGATTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.50,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //