Array 1 161809-160803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPD01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161808 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161747 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161686 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161625 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161564 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161503 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161442 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161381 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161320 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161259 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161198 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 161137 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161076 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161015 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160954 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160893 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160832 29 93.1 0 A...........T................ | A [160805] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCGCGAGGAATACTGCCAGTACCGAATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGTGGTGGCCAATGGCAATTAATAACAGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGCGAGACCACGAAAGAGGGAATACCGACAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGTGCGTGATGAGGTTCGCGGAGCATGTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163280-162031 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPD01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163279 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163218 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163157 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163096 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163035 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162974 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162913 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162852 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162791 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162730 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162669 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162608 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162547 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162486 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162425 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162364 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162303 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162242 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162181 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162120 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162059 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAATTACTACCGGGCTAACACAAGTGGTAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAGATGATCTGGACAACTGCCCGCAATGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 181830-179787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPD01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181829 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181768 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181707 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181646 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181585 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181524 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181463 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181402 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181341 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181280 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181219 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181158 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181097 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181036 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180975 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180914 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180853 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180792 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180731 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180670 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180609 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180547 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180486 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180425 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180364 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180303 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180241 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180180 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180119 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180058 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179997 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179936 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179875 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179814 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //