Array 1 237328-236234 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAIDJ010000002.1 Streptococcus pyogenes strain 44015V1S1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 237327 36 100.0 30 .................................... ACGTATCCTTAATGAAATTCTCAAGCTAGG 237261 36 100.0 30 .................................... TATTTTAAGTGTGGTGGATCGAAGACAACA 237195 36 100.0 30 .................................... TATAAGAGGAATAAATGGTGTGGTGGTGCA 237129 36 100.0 30 .................................... TGAGGCCTTATGTGGATGGTGATAAAGTTA 237063 36 100.0 30 .................................... CCGATATACGCCTCAGCACGTAAGTAAATT 236997 36 100.0 30 .................................... AAATAAACCTGAATTGATTTATGACGCCCT 236931 36 100.0 30 .................................... TGAGCAAGAATTTAATGTCAAAGAGTGGAT 236865 36 100.0 30 .................................... AAGACCCAATTCAATAAACATGCTTCCTAA 236799 36 100.0 30 .................................... TTGTGACAGACGAAAAAGTGGAAGAGGTGC 236733 36 100.0 29 .................................... CTCTAGATGTTTCTTATCTCTTAAACGCA 236668 36 100.0 30 .................................... TTACTCCAATAAATCGATTGACGAATCATT 236602 36 100.0 30 .................................... CTATCTAGTAAGTCAATCGCATTTCCCCAA 236536 36 100.0 30 .................................... AAGGAGGTTCTCGTTTCTATTTTTTAATTT 236470 36 100.0 30 .................................... CTTACGAGCTGAGTTTACTCGTAGTAATCA 236404 36 97.2 30 ......T............................. TATCGTTAAAAAACAGAAAGGCGGTGGAAA 236338 36 97.2 30 ......T............................. GACATATTAACGTCCTTTCTCCTGCTTTCC 236272 36 97.2 0 ................................T... | CT,T [236237,236243] ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.5 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTCATTTTTGTCAATAGTGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : ATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGGGGGGTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACAAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTAGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 45710-46006 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAIDJ010000004.1 Streptococcus pyogenes strain 44015V1S1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 45710 32 100.0 35 ................................ AATATCTGATTCAGTAAGCGGCTTACCATCGAACG 45777 32 100.0 34 ................................ TACGATTGAAATACCATAACAAGCGATAAAAAAT 45843 32 96.9 35 ......T......................... CCAACCTACGGCAGCAGCGCTATCTAGTAAGTCAA 45910 32 96.9 33 ......T......................... TCCTCTCATCATATCTTTTAAATCTTTAACATC 45975 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ =================================== ================== 5 32 98.1 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AGGCCATACGAGGAGATTTAGAAAGTTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACTGATTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : GATGAACCCGACCTCATTAAAAGAGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTAC # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : GTCTCATCCTTCATGGGTGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //