Array 1 857187-858474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015573.1 Pasteurella multocida strain USDA-ARS-USMARC-60714 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 857187 28 100.0 32 ............................ TGTGCACTCCGCTTTCATCGTGTGCGTTGATG 857247 28 100.0 32 ............................ GTGCACTCCGCTTTCATCGTGTGCGTTGATGA 857307 28 100.0 32 ............................ TTTGTATCTACTAATATCACGCTATCTTGTTT 857367 28 100.0 32 ............................ GCTTTAACGACCACTTGCGCAACTGCTTTCCA 857427 28 100.0 32 ............................ ATCGATAGTGATAGTGCGTTCAGTATGTTTGA 857487 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 857547 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 857607 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 857667 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 857727 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 857787 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 857847 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 857907 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 857967 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 858027 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 858087 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 858147 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 858207 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 858267 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 858327 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 858387 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 858447 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2085638-2081109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015573.1 Pasteurella multocida strain USDA-ARS-USMARC-60714 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2085637 28 100.0 32 ............................ GGCCTAAGCTCCGGCGGTATAGTATCTTGTAT 2085577 28 100.0 32 ............................ CCAAGCTTTGACAGATTCAGGGGTCTTGAGGA 2085517 28 100.0 32 ............................ TCGATAGACTCAGGGACTGTAAACTGAATGCC 2085457 28 100.0 32 ............................ TTCTTGGTGACAAGTCATTAGCTCGCGAATGG 2085397 28 100.0 32 ............................ TATTGACCTCATAGGTTGCTGTATCATTATTA 2085337 28 100.0 32 ............................ TATACGGCAGTTAACTATTATATCAGTCTTTT 2085277 28 100.0 32 ............................ TTGTGCGTCCACCAATAACACACTATTTTGTT 2085217 28 100.0 32 ............................ AGAATCTGGTGGTAAAGTGGGCAAGACTAACG 2085157 28 100.0 32 ............................ TACGCAAGTCTTCCTGTGTAAAAGTCTTATTG 2085097 28 100.0 32 ............................ AAACGGTCTTGCTTGGTCGCTCACATCAAACT 2085037 28 100.0 32 ............................ ATTGATGCAGCAGCAAGACATATTTCAGACCT 2084977 28 100.0 32 ............................ TTTTCGGCTACTTTTAAGGCTTCTTCTTGTTT 2084917 28 100.0 32 ............................ AAAAATGTGGACGCATAAGAGTTCTTTCTTGA 2084857 28 100.0 32 ............................ ACAGGAGCCTTATAGGTCTCATTTAGACTTAA 2084797 28 100.0 32 ............................ TTGTTGACAAGTTAAAAAAGACTGATATAATA 2084737 28 100.0 32 ............................ TGTGACACACTATGTCCAGACGTTTAATAAGC 2084677 28 100.0 32 ............................ AACATGGACGTTTACTGTCGGTCAGGGTTATA 2084617 28 100.0 32 ............................ TAAGGAGGTATCAGAAGATGAGCGCGGATAAC 2084557 28 100.0 32 ............................ TCTGAGCAGGTGCGCTATGTAAGGGTGTTAAT 2084497 28 100.0 32 ............................ ACTAGGAAACGTATCGGTCTTTGAGACTGAAT 2084437 28 100.0 32 ............................ AACTGATTACTAAAGAACAGTAAGTTAATTAC 2084377 28 100.0 32 ............................ GCAATGTATTTCTCGAACTGAAATATTCAGCA 2084317 28 100.0 32 ............................ ACTTTCGTCGTGTGCGTTGATGAACTCTACTA 2084257 28 100.0 32 ............................ TTTACGTCTATCAGTCGGTATTATGCGGTACA 2084197 28 100.0 32 ............................ AAGTGAGTGGGCTGGTTATTGTAAAGGTAACA 2084137 28 100.0 32 ............................ ACACCAAGTCAGCCATAAATGTTGCGGACTTA 2084077 28 100.0 32 ............................ TTTCATGATATCATCACCTTGTGGATTAAACG 2084017 28 100.0 32 ............................ TCTTGTTGTTTATATTATATCAGTCTTTTTAA 2083957 28 100.0 32 ............................ TCATTGAGAAGTCGCTTAGCGTTCGCTACGTC 2083897 28 100.0 32 ............................ ATGCACTCCGCTTTCATCGTGTGCGTTGATGA 2083837 28 100.0 33 ............................ ATACACTCCGCTTTCATCGTGTGCGTTGATGAA 2083776 28 100.0 32 ............................ TTGAGCGTCCACTAATAACACACTATTTTGTT 2083716 28 100.0 32 ............................ TGCGTGGAACTAATGAGATTGACAGTCGTAAG 2083656 28 100.0 32 ............................ TTTGTTGTTTATATTATATCAGTCTTTTAACT 2083596 28 100.0 32 ............................ TTTGTTGTTTATATTATATCAGTCTTTTTTAA 2083536 28 100.0 32 ............................ ACTTGATGAGATGCCAGAGCCTTTTAGACGCC 2083476 28 100.0 32 ............................ TCCAGTTAACTCAAAGTCATCTAGCAGTCATC 2083416 28 100.0 32 ............................ TTATGCCACTGTCGAAGCGTCCGAACATCAAT 2083356 28 100.0 32 ............................ TCCCTCCAAACAGCCTCGTCTAATTAAATTAT 2083296 28 100.0 32 ............................ AATAACACACTATTTTGTTCAAATTTTACCGC 2083236 28 100.0 32 ............................ CAAGATCGCTTTATTTCTAAGCTGCCTACACG 2083176 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 2083116 28 100.0 32 ............................ TGTTGGCAAAAAGCTTACAGAGGTCTTGATTA 2083056 28 100.0 32 ............................ TTCAGAGTTCACTAAGACGCGTTGGTTATTCT 2082996 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCAGACCTCATCCCT 2082936 28 100.0 32 ............................ ACTGTGGAACCGTCGATTCGATAGGTCGCCAC 2082876 28 100.0 32 ............................ AGAGAATGAAGCAGACGGACAAGTGGTAGGAC 2082816 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 2082756 28 100.0 33 ............................ AATAGTCATCGTTCATGATTGTTGACTTATTAG 2082695 28 100.0 32 ............................ AGATGAGTAACTAAAGGTTGACTTAATGTTGA 2082635 28 100.0 32 ............................ AAGAACTGGGAACTGAGCCGATTTACCAGAAC 2082575 28 100.0 32 ............................ AAACCAGTCCTACCACTTGTCCGTCTGCTTCA 2082515 28 100.0 32 ............................ ATTATCGAATACTTAACACAAGCCCGTGCTAA 2082455 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTGTTGTTAATC 2082395 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 2082335 28 100.0 32 ............................ CAGAGATTTTAAAATATCCAGAACAAGGTAAC 2082275 28 100.0 32 ............................ TACAACTTCTTCTTCACTTACATATTGTAAGA 2082215 28 100.0 32 ............................ GCTTGAACTAGAATACTCATAGGAGCACTTAT 2082155 28 100.0 32 ............................ TTCGCAATGAAAACGGGGAACTTTCAGAGAGC 2082095 28 100.0 32 ............................ ATACCGCCCACCCACAAGCGTACTTGAGTCTT 2082035 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 2081975 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 2081915 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 2081855 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 2081795 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 2081735 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 2081675 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 2081615 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 2081555 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 2081495 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2081435 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2081375 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2081315 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2081255 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2081195 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2081135 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 76 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //