Array 1 1622-2699 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSW01000196.1 Xanthomonas translucens pv. graminis strain UPB437 Xt_graminis_UPB537_Contig_275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1622 31 100.0 35 ............................... GGCTGCGGTGTGGTTGTATCAACCGGAGTTAGCGG 1688 31 100.0 36 ............................... CGGTTGTCGTCCACGAGTCGCAGTACGTCCGCAAAA 1755 31 100.0 35 ............................... TCGCTAGGGGTCACCGTGCGCAGATTCGAGATGGC 1821 31 100.0 35 ............................... TACGGCATCAACGTGATTGTTGCGGTCGGCCACAA 1887 31 100.0 34 ............................... GTCTTGGTCGTAGAGGCCGCGAAGCATGTCGTAA 1952 31 100.0 34 ............................... AACGATCGTGGTGAGGTTGTGACCACACTATACG 2017 31 100.0 33 ............................... CGCTTCAGCGCCGCGCGGATGCTGGTCTCCAGG 2081 31 100.0 33 ............................... CCGCTTCCCCGCAGGGTTTTGGGCGCTTGGGGT 2145 31 100.0 33 ............................... CCGATGGAACCGCAAGCCGCCTAAGATATCCCA 2209 31 100.0 35 ............................... ATCTCTTGGGTCTCTGGGTTGGCGGGGCCGGTGTG 2275 31 100.0 34 ............................... GACTTGGCGGTTACGGATACTGCTTTGCTCAATT 2340 31 100.0 36 ............................... ATTTATGACGGAGAGCGATTTTTTCGGCGGCATGAT 2407 31 100.0 34 ............................... GCGCAAACTCTGCCGGCTCAAGCACAAGCATGTG 2472 31 100.0 34 ............................... TTTCTGGCTATCAGCTGCGCGGCCTGCAAGCGCG 2537 31 100.0 35 ............................... GGCACCAAAGATCCTTGCGGCACAAGCTTTAGCGG 2603 31 96.8 34 ....................C.......... GCGTTGGCAGTTCGTCGCGCTGGTGAGGTTTAAG 2668 31 87.1 0 .....T.........A.C.......G..... | C [2693] ========== ====== ====== ====== =============================== ==================================== ================== 17 31 99.1 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCGCCGCGCCATGATGGTTTTGGTCAGCTACGATGTCAGCACGAGCTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTTTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCGGGCGTCGACAGCCTTCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCACGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTTGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCCGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTAAAATAAAAACATCAACCTCTTCCACTTGCTGGTATGTCCGCGGAAGCCGAATTCGATTGCGTCTCCTAAGGGTTCCGCAAAAGTGCGGACTTTTTCCCAACACCCATCAGCACTTATGCTTAGGGCG # Right flank : CTGACTTGGCGACGCTGTGTCGTTCTATCGCCTTTGCCCACAAAAAAAGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTCCCTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACCGTTCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGTTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAACGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //