Array 1 610276-604710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044013.1 Methanothermobacter sp. THM-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 610275 30 100.0 39 .............................. GAACTTGTTCCGCCTGTTCTATATCTTTTTTTATTAATA 610206 30 100.0 37 .............................. CCAAACGGGTTTTTAACAAAATTAACAAACTCTTTAA 610139 30 100.0 40 .............................. TTTGTAGTCTTTTTTCTTACAATTTTCACCTCTACACCAG 610069 30 100.0 36 .............................. CCAACCATATCATCATAAACTATATTAAACCGTTCA 610003 30 100.0 36 .............................. AAGTCACAGTGAATACGAAGAAATACAAGACATAGT 609937 30 100.0 36 .............................. GTGGTGGTTTGGGTGGTCTGGCGTCAGGGTGGCCTT 609871 30 100.0 38 .............................. GAGGGAGCAGTTTCAACACACCCTACCGGATCGGCGAA 609803 30 100.0 36 .............................. TACCAGTCAAGGAACAAGACATGTAAGAAACATAAA 609737 30 100.0 36 .............................. AACATTGGTGATTGCTGGAGTTTAAGTAATCTACTT 609671 30 100.0 37 .............................. ATTATATAAATATAGGTGATAAATATAATGAAAATAA 609604 30 100.0 36 .............................. CAACTTTGACGTTGTTGATTAGGGTTTTGCCCTTGG 609538 30 100.0 36 .............................. GGTTTCTCCGTGAACGGGGTGCATAGCGGTGCTTTC 609472 30 100.0 36 .............................. TCTATGACTTTTTGGATGGTGCTTTTTAAGGCTTTG 609406 30 100.0 37 .............................. TTTTATATTATATGAACATAATAAATATGCAATATTG 609339 30 100.0 36 .............................. CGTGTATCCACCATTGCACCACTAATTTGATTAAAA 609273 30 100.0 36 .............................. GATGAATACAAAAAAGATATATACATAATAAGATAT 609207 30 100.0 36 .............................. GTATGATACCCATTTCTTTTGGTTTCCTGATGCATT 609141 30 100.0 38 .............................. CAAAGGAAGTGGGGAAACTCAGCAAATCATTTAAGGAA 609073 30 100.0 36 .............................. TGAACTCTCAGCCAAACGCTACAACACCATGTTCTT 609007 30 100.0 36 .............................. CAGTGAAGATTGATGATGCTGTCCTCCCGGCCCCCG 608941 30 100.0 34 .............................. TAGAGGACTCAGTCTTCCTCCATGGAGGGCACGG 608877 30 100.0 36 .............................. AAGGGAAAGAGGTGATGCATATGGACGTAGTAGAAA 608811 30 100.0 36 .............................. TTGAGGATGCTGGCCATGATGGTGATTCTCCTGACG 608745 30 100.0 36 .............................. TCATATCCGTCCCTGCGGAATGTTCTCCTCCGCACA 608679 30 100.0 38 .............................. CATTTAATTCAGTGATGTTCACATTGAACTGGCTACTG 608611 30 100.0 35 .............................. TCATACCTTCCTGTGCCATTGTAGACGTAACATTT 608546 30 100.0 36 .............................. CTGAAGATGCTTTACAAGTACTCGGTAATTGTATTG 608480 30 100.0 36 .............................. CATAGATGAACTAGGATACTTCAACAACGCAACAGA 608414 30 100.0 35 .............................. CGATGTAGGGGCTAGATTCACAGTCACAGGAGAAG 608349 30 100.0 38 .............................. ACTTTGTGTAATTGGTATGCAAATGTTATTATGTCATC 608281 30 100.0 37 .............................. GTTCCTAATGGGAATTGGGAAGTTTCATGGTGGCAGA 608214 30 100.0 35 .............................. CATATTCCCTTATTTCCCTTATATTTCTATTCATT 608149 30 100.0 37 .............................. GGAAATATAGTGTCTCCATAAGCCTCAGCGACGGTCT 608082 30 100.0 39 .............................. TCACGCATCGACTTATTCAAGGTGGAGGTGAATGAATTC 608013 30 100.0 36 .............................. AAGCCATCAACAATGTTAACAGTTCCCTTGGGAATC 607947 30 100.0 36 .............................. CTGGTGATCGGCTGGCGGCTCTGACGCCTCAGATCC 607881 30 100.0 36 .............................. ACCACATATCTATATCTATGGAATCAAGTATATATA 607815 30 96.7 36 .............A................ TGATCTTCTCCTGTGTTTTCCTGTGTTCGAGTGTGA 607749 30 100.0 36 .............................. ATATTATGTATGTGTATTTTGTTGTCAGCGAAGTTG 607683 30 100.0 37 .............................. GCCACTGACTACTATTGCCCCGCCTTCTTCGCTGAGG 607616 30 100.0 37 .............................. CCGTCTCAGAGACAATCAGAAACCTCCCACAGGAAGA 607549 30 100.0 35 .............................. CTGCACGTATTTTACGCTGCCTGTCACTATGAATC 607484 30 100.0 36 .............................. ATCTGCTTCGGTTGCTCCGAACGCTCATCCAGTGAA 607418 30 100.0 36 .............................. CCCATCCTTCCTGGTCTTGGAGGGTGTGGTGGAGGA 607352 30 100.0 37 .............................. CTGTGAAGTAGGCTTCTATGACTGGTTTGGGTGGTGT 607285 30 100.0 39 .............................. GAACTTGTTCAGCCTGTTCTAAATTATCTTCTTTCATCA 607216 30 100.0 35 .............................. CGGCTTTTGCTCTATTTGGAGACATATTACTTCTT 607151 30 100.0 36 .............................. AAAACCTCCATAATAATCTATATGGACTTTGGTACT 607085 30 100.0 36 .............................. ATCTAATTCTGATCCTGCTATTTCCTCCAGCTCATC 607019 30 100.0 34 .............................. GTTGTTTCCATGCATATCCTGGCGAATATTTCTC 606955 30 100.0 36 .............................. CCTCCAGGGGGTTCTGGTGGCTTTACCCGGCCTCTT 606889 30 100.0 37 .............................. GCGACACGGCGGAAAACTAGTAGAAAACACCAGGAAA 606822 30 100.0 37 .............................. GTGGGTCCATAAGCGCGAATTCTATCTGCTCAAATGA 606755 30 100.0 37 .............................. TCTTTTGTGATTTCCATTATTCTTTTTCGTTTGCCTA 606688 30 100.0 35 .............................. CCTCCACTGTGACTCCGACCACGTATCTTACCTGG 606623 30 100.0 36 .............................. GAAAGGGTAATGAATAATTCTGGAATGCCGTTCCAG 606557 30 100.0 36 .............................. GGTAGACTATACACTACCTACATACTCATTAACCAG 606491 30 100.0 37 .............................. GAAGATTAATTCGCAGTTGTCGGGGAGGGCTACTTCT 606424 30 100.0 37 .............................. CATATTCTTCGCCTCCTCAATGTATTCAGCGAGATCC 606357 30 100.0 36 .............................. TTGAATACGTCTTCGAATATTTCGACTCTTTCTCTG 606291 30 100.0 37 .............................. GTACTTTCCGTTCACATATTTCCCACGGCTTGTGAGG 606224 30 100.0 33 .............................. TCGAGAGGAAGTACTTCACTCTCGATGAACTCG 606161 30 100.0 37 .............................. GCTCAACGTTCACGTACGCCTCATACTCCTCCGCACC 606094 30 100.0 37 .............................. ACACTCAAATGGTATGTTTGGTAAAACTACATGATAA 606027 30 100.0 39 .............................. GAACTTGGCGAAGTACGCATCTTGTGCGTACTTCTCACC 605958 30 100.0 39 .............................. GAACTTGGCGAAGTACGCATCTTGTGCGTACTTCTCACC 605889 30 100.0 36 .............................. GGAGGAAGCGGATCGGGTCCTCCACCTGCTCCTCCA 605823 30 100.0 36 .............................. CCGTTTTGGTATGCTATTCTTTATCGTCTATAGTAT 605757 30 100.0 37 .............................. GCTTCTTCTAGTACTGCCTGGGCGTTTTTTGCCCAGG 605690 30 100.0 48 .............................. TGCGAAGTATAATGCGAAGTATAATGCGAAGTATAATGCGAAGTATAA 605612 30 100.0 37 .............................. TTCTGTTTTTTTCATCAAATCACCCCATATTCTTTTG 605545 30 100.0 37 .............................. ATTTCTTTCTTCTTCTGGCATTCCCATTTCAACTACT 605478 30 100.0 36 .............................. TTTCAGATGCTATGGTGATACTCCGCCCATCCCTCA 605412 30 100.0 36 .............................. TGGTTTGATATTTTTTTGATTAAGGTTTTTAGCAAG 605346 30 100.0 35 .............................. TTGGTCTGACGTCACTATCTTCCCCAGACCTATGC 605281 30 100.0 37 .............................. CGGGAGGAGTATTCTGACCGGAATCTATGATAACGTC 605214 30 100.0 38 .............................. CTTCATCTATTTCTGGGATTCGGTCTCTCCATGCATGG 605146 30 100.0 36 .............................. TGATCAGTAGACTTATTGTCATTATTATTATTGCAA 605080 30 100.0 36 .............................. TTGGTTTGACGTCACTATCTTCCCCAGACCTATGCA 605014 30 100.0 42 .............................. TTTGATTTCCATTTTCTTTCACCCCATTTCTTTTTTTTTTGG 604942 30 100.0 37 .............................. GAGGATTTGCAATGTCTGTGTGAGGCCTTCATCGTCG 604875 30 100.0 38 .............................. TTATGGTGTCTATTGCTTTTTCAAGTTCTTTATTTATT 604807 30 100.0 38 .............................. TTACTTTTTCAGCAACGGCCATAAAGCCGTTGTTGACC 604739 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================ ================== 84 30 100.0 37 GTTAAAATCAGACCAAAATGGGATTGAAAT # Left flank : ATGAGTCTTTGATGGTGTCTGAATCAACTATATTTAATCTGGATCTCAATGGACTCTAAAGTGCTTAAAAGACCTCTTTGAATAAACAGCACATTAAAACTTACTTCAATGATAACAAACATTGATTTAAATATATCCTTGCACGTTTTAATTCTTTTATTTTTATTTTAAGGTGTTATGGCCGGTTTATTGGTTATTTTAAGGCCTCTGGTTCAGTCGTCTATCCCATGAAAATTCACAGGAAAATTTTAATAACAATAAGTTATTTTAACTCCTTTTTTACTTTAAAAGGTTGTACAGGCACCATGGATTATTTATCTTGTTATGATTGTTTTAAAATTGTTTTAGATCATTTCGGTGTCTTATTTTTTTATTTGGAGATGTTTTGTTGAGTCGTCTGCCTTTATAAATGGAGTGCATTATTGGGGGTCGACAAATTTATATATCTGAAAGGAGAAATTTCATAGCGTTAAGGGCCAAACAGAGAAAAAATCCGTCCT # Right flank : AAAGCTGCAACAAGTACAAAGCATACCACAAGAACTATTTTTTTTTGTCTATCTATCCAATTGTCCACTCCCTAACAATGAATAATATGAAAATCCCGGTTATAAGCGTTGAGGAGTTGCGTAATCCTGTTTTATGGTATTGATGAAAACTGGAAAATGAAACAAATTGAATCAGTCGCGATGAAGAACCTTAAGTTCTCCAGTCCTAACATCGATTATCAGTCCATGGACAGGTATATCATGGGGGATTGCCCTGAATTCCTTGATGGTCCTGACACCTTCAATAACATTTTTTTCCTCATCATCAATTGCCAGGATCCAGTCCTCCAGTCCAAGTTCCTCGATAAAATCAGGGGGGACTCCCTTCTCTTCCATGGTTTCCCTGAGTCTTTCAAAGTCAACATTTGCCATTCCGCAGTCAGTATGCCCTATGACCATTATCTCCTCGACGCCGAGGGAGTGCACCGCAACCACAAGTGACCTCAGTGCATCATCTGTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCAAAATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 1006477-999834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044013.1 Methanothermobacter sp. THM-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1006476 30 100.0 36 .............................. ATTAGATAGAAAAGGTAAACAAAATATAGTCAACTT 1006410 30 100.0 37 .............................. GAAGAATAACCAATTAGAAGAAGTTAAACCGGAAAAC 1006343 30 100.0 35 .............................. GTTATAGTAGCATTAGACGGTATGCTACTAAAATC 1006278 30 100.0 36 .............................. CGCTGGACATACACAGTACAATTATTCGGAATAATA 1006212 30 100.0 36 .............................. TTAGCTGTAGTTGTAGTTTTTTTACCACCAAACAAA 1006146 30 100.0 36 .............................. ACCATTGAGTGGTATCATGAAATTCTTTATTTCTTT 1006080 30 100.0 37 .............................. GTGGTGAAGGTATAAATACTAATCGTAAAACTGCATA 1006013 30 100.0 36 .............................. TATCCATGCTGAAATGCAGTAGTATCAAAGGTTTTA 1005947 30 100.0 37 .............................. CAATTAGACTATATACATGATATGTATTTAATCATGT 1005880 30 100.0 35 .............................. ATCCTGATTCTCTAGTGAATATCCTAGAAAATCGT 1005815 30 100.0 37 .............................. TTGGAAGTATATACATCCAGATAGCAGTGTAGATAGA 1005748 30 100.0 36 .............................. TATTTATCACCCATTTTTTTGGTAGATACAAATTTA 1005682 30 100.0 36 .............................. AAAAAAGGCGGTGAGTGGACAAGGAGACTTGAAAAG 1005616 30 100.0 34 .............................. TAAAACGCCTGGAAATAGCTTATTCATCATAAAG 1005552 30 100.0 34 .............................. CTTCAACTCAAGGAATTCATCTATATCAAACCTG 1005488 30 100.0 36 .............................. TTCACCGTCTCATCTGGGGCTTCTATGACTAGTTTC 1005422 30 100.0 36 .............................. TTTTATCACCGGTCACAACTGTATTTTCCGTTTACA 1005356 30 100.0 36 .............................. ACTAATATTAGCGGCACCTGCAGCTGCAGTTTTCAC 1005290 30 100.0 35 .............................. ATTTTTTTGTAATAATGTAAATGGGTTTATTTATA 1005225 30 100.0 36 .............................. ATGCTCGCCATTTCAAGAGTACCGAATCCAGCGATA 1005159 30 100.0 36 .............................. CAAAGGAAGTGGGGAAACTCAGCAAATCATTTAAGG 1005093 30 100.0 36 .............................. TCTGCGTGAGGCCCCCGGCCGCTCCAATGAGACCGG 1005027 30 100.0 34 .............................. TTCGTGTGATGGTATTCGAGTCCTGGGCAGGCTC 1004963 30 100.0 36 .............................. CTTCTTCTATTGGGTGATCAGCAGCGTCCCACATAA 1004897 30 100.0 37 .............................. TTTAGTGCATATTCAGATACAAGACCCTGTAAGTAGT 1004830 30 100.0 36 .............................. CAAAGGAAGTGGGGAAACTCAGCAAATCATTTAAGG 1004764 30 100.0 36 .............................. GCGGAACCACCGGCGTACCCAACATCCCCTCAGTGA 1004698 30 100.0 38 .............................. GACTTTTTTGATACACAAGATAGGAGTAAAAGGTTAGC 1004630 30 100.0 36 .............................. TTGAAGGTTAAGCTGGGTGTTAAGATGTTCAACTGG 1004564 30 100.0 37 .............................. TCCAATTACACTACACTTGAATTATATAAATGTGTAG 1004497 30 100.0 35 .............................. TTACAAAAATAATGAACACTTTGCACACGTATCAA 1004432 30 100.0 36 .............................. CACGCCGGCTGAGGCCAGGGGAGTTATGAAGCAGTA 1004366 30 100.0 37 .............................. GTGTACTCAGAGGGTAGGGCCTTAAGCATACTGTCGA 1004299 30 100.0 37 .............................. AGGTATGCAGTCACGGGGAGAACTGGACTGGAACCGT 1004232 30 100.0 35 .............................. CTGAACACAATAAGTTTAGGTATCCCTAAAAATTC 1004167 30 100.0 38 .............................. GCCATGATCGGGGTTCTAGTATGATTGTGGGGTCGCTG 1004099 30 100.0 35 .............................. TCAACGCCAAAGTCAAAGCCGTGAGCCTCGCATTA 1004034 30 100.0 36 .............................. CCAGATGAAGCCACAGTGAAAGAGAAATTAGACCTC 1003968 30 100.0 34 .............................. CGTATAGCCCATATAGTCCATATTTGTCGTACAG 1003904 30 100.0 41 .............................. TCACATACTCCACTATCGCTCCAGTCTCATCCACTTGGACC 1003833 30 100.0 34 .............................. TTTTTTATGTGGAGCATGTATGAGTATGCTCCAC 1003769 30 100.0 36 .............................. TCAATAATCTGGATAGTGCAACGGGGGGTTGGGCTT 1003703 30 100.0 36 .............................. CTACGAACTTAACGGCGTGTTTTAATGATTCGTCCA 1003637 30 100.0 37 .............................. CTATACTAGATGTTGGTGTGGAGCCCTTGATGGATGC 1003570 30 100.0 37 .............................. ATCCGTGGGTGGCTTCATTCAGGCTGATGAAAGCCTG 1003503 30 100.0 36 .............................. GTGCATCTTCTGCAGTGGGAGGATCTCCGTCCGAGG 1003437 30 100.0 35 .............................. TTATTTGCACCATTTGCAAGGTCACCACACGATTG 1003372 30 100.0 36 .............................. AGGTGCCTGGCCACTGCATCGATGATCCCTGCAAGT 1003306 30 100.0 36 .............................. CAGAATCTTGAGGAACGGGCTGGTTATAACCACATA 1003240 30 100.0 36 .............................. AATTCTGAACATTTTTTATTTTCTTACTTTGGGTTA 1003174 30 100.0 37 .............................. TAACAGACACAGACACAGACATCCTCGAGGAGATCAG 1003107 30 100.0 36 .............................. AATATATACAAAAAAGATATATATATAATATTACAT 1003041 30 100.0 35 .............................. AAAATAAGGCTCAACCTCACCCCACCAACCCCAAA 1002976 30 100.0 34 .............................. TTAAAATCCTTTTCAAGGGCATCCAGAACCAATT 1002912 30 100.0 36 .............................. GAATCAAGGTCAGTACCCAAATCAATTTTACAACTG 1002846 30 100.0 36 .............................. AAGTTCTTAGCGGCGTCGAAGGCCTTCCCAGGGGCC 1002780 30 100.0 36 .............................. AGCGACGTAGAATACAAGTTCGTAGTCCCCATTCTC 1002714 30 100.0 36 .............................. CGCGATACTCCTCGCGATCTGATCAGCCCTGAGACG 1002648 30 100.0 37 .............................. TTTTTTATTCTTAAGTGGGTATGTAGTGGGTATGTAG 1002581 30 100.0 36 .............................. TTTTCATTTTATTCATCTCCAAATTCCACTATATTA 1002515 30 100.0 34 .............................. ATTTCTGTTTCTCATCTACTCTTTTCATCACAAG 1002451 30 100.0 37 .............................. TCAATGTTAATAAATTATACTAGAGCACCTAAAAGCA 1002384 30 100.0 36 .............................. GCGTAGTAGTTCAGCAGATTGTTCGCCCGCATCATC 1002318 30 100.0 35 .............................. GCCTCTTCGCTGGCGCTGCGGGCGGGGCTGGCCTC 1002253 30 100.0 35 .............................. GGTGTTCCCTCTGTGAAGGAGCCCCCTGTGACCGT 1002188 30 100.0 37 .............................. ATGGTGACTTGGAAGGGAAGGCTGTGGTAGTCGGTGT 1002121 30 100.0 37 .............................. TCGTAACGTGTTTATATGGCTTGTGCTCCCTGTTTTC 1002054 30 100.0 36 .............................. TAGGAAGTTCACGAAATTCTGCACGAACCGCACCCC 1001988 30 100.0 35 .............................. GCATCTTGAAGGATCATGTTGACTATCTGGGCCAG 1001923 30 100.0 37 .............................. AGGTCATCATGAGAAAAAGAAGGAGAAGGCGCAGATG 1001856 30 100.0 36 .............................. CCCTATGGAGGGCGCTCACTTCAACTCTTCTCATTC 1001790 30 100.0 36 .............................. CAAGCACGGAGGTGACATCAATGAAAACGAAAAATA 1001724 30 100.0 36 .............................. TAAAAACAGAAATAGGTGATAGATATGGTAGAAATA 1001658 30 100.0 36 .............................. TCATTTTTTTCACCTTCAAGGAAGTTTTTTTTCATC 1001592 30 100.0 35 .............................. CAGGATCTCTTTCATCATTTCCCTTTCACCTCCTT 1001527 30 100.0 37 .............................. TGTTACTTTGTTACTTTGTTACTTTTATTAATTTATT 1001460 30 100.0 35 .............................. CAAGGTGCATCATGATGAAATACTGGGCAGGAGAA 1001395 30 100.0 34 .............................. CAGTTATGGCCTGGAGGAGGGCCTCACGACCCTC 1001331 30 100.0 36 .............................. ATGAGAGAAACAGAAAGGAAGAGACACGGAAAAGAA 1001265 30 100.0 37 .............................. GGAACCCAGACGGGGAAGAAACACTCATCCGCGTCAA 1001198 30 100.0 40 .............................. GCCTCTCTATCGTCTTCGTTTTCATTGATGTCACCTCCGT 1001128 30 100.0 37 .............................. TATCTATCACCTACCGTTTTGATGTGGTTGTTTCCAA 1001061 30 100.0 36 .............................. AAATTTGCCAAATTGAACAGTTGTAAAATTGATTCG 1000995 30 100.0 35 .............................. AACGTAGCAGTGACATAGTACTACACCACTGCCAG 1000930 30 100.0 37 .............................. TGTAGTCGCTATTGAAATGCGACAGGCTGAAAAACAA 1000863 30 100.0 35 .............................. TTAGTATCTACCCTTTTCTATCATATCTAATGTGT 1000798 30 100.0 37 .............................. GGTATGATTATTATTATGGTGATAGGTTTAGTAATGC 1000731 30 100.0 37 .............................. TGAAACGAATACAATTGTTCACATTGAACCGTGTAGT 1000664 30 100.0 36 .............................. GATGATATCCGTGATGATGATGAGTTCCTCCGCAGG 1000598 30 100.0 36 .............................. TACCTTCCTCGCCAGCGCTGAATATGATATGGTCCT 1000532 30 100.0 37 .............................. TTTTCCTTCTTGAAGAGGTTGTAGCGGCGTTGCATGT 1000465 30 100.0 36 .............................. ACACCACCTCTATCCTATCTCTTTTTCAGCGTATCA 1000399 30 100.0 36 .............................. TAGAGGTATTGGCGTGTTTTCACGCCTTTATACTCG 1000333 30 100.0 37 .............................. ATTTCGACCCCTCCATCACCTACAAGGTGATCCGGAC 1000266 30 100.0 38 .............................. ACCTGATAAACAACAGGAACCGGCAGATCAAAGCACCC 1000198 30 100.0 36 .............................. TGATGTACTTGTCATAGGATAGCCGGGAACTGTAGA 1000132 30 100.0 36 .............................. CCTCTTGTAGGAGGTCTCTACACCTTTCGTAATATG 1000066 30 100.0 36 .............................. GCATCCATGATTTTCTCTACAGCTTTTTCCATCTCA 1000000 30 100.0 40 .............................. ACGCACAACCATCCACGACGAAGAAGGAAACCGGATAACC 999930 30 100.0 37 .............................. TAGAGTAGGAGCCATGGGAGGAAGTCTTTGCCTTTCT 999863 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ========================================= ================== 101 30 100.0 36 GTTAAAATCAGACCAAAATGGGATTGAAAC # Left flank : AACCCCCAGGGAAGCCTATGAATGCTCAGGGCTCTGGATGATGCGGATTCAGATTATCTGATTGACCTTCAGGGGTTACTGGATGACTTTGATGATAATCTGAGCTATTAAAAATGCCTAATTGATTTAAATATCCCCTTGCACGTTTTAATTCTTTTATTTTTATTTTAAGGTGTTATTGACTGTTTATTGGTTATTTTAAGATCTCTGGTTCAGTCGTCTATCCCATGAAAATTCACAGGAAAATTTTAATAACAATAAGTTATTTTAACTCCTTTTTAACTGTAAAAGTTTGAACAGGCACCAGAGATTATTTATCTTGTCATAATTATTTTAAAATTGTTTTAGATTATTTTTGTGTCTTATTTTTTTATTTGGAGATGTTTTGTTGAGTCGTCTGCCTTTATAAATGGAGTGCATTATTGGGGGTCGACAAATTTATATATCTGAAAGGAGAAATTTCATAGCGTTAAGGGTCAAACAGAGAAAAAATCCGCCCT # Right flank : TTAGTTCGCTATACCGTTCTATTACGAAGATATCCTTCTGTAATTATACATCTTCATGAACTACCACTGCAGTTCCTGTGGCAGTCACTATAACAGCACTCCCCTGCAGTCCACCAACAGAGACATGGTCTATTATCACTTCAACAACGGCATTGGCGCCCTTGATGCAGCCCTATCAAGCATCACAGAGATGGCATCTCTACGCGCCTCCGTCAGTTTGAACCTGTTCTGGGAGGGTGGTTCAATGATCCTCATGAGGTTTGCGAACCTCCCCTCATACCTCACCTCTTCAGCCACGGCTTCACCGGCTACAAGACCCAGATAACTCTTTATCTTGTCCCCGTTCACACCAGGAACAGATACCAGAGGCATTTCCATCCAAAGATCATCCAGACCCTCAGTAACGCTATGGGGACCTGTTTCAGGAGCCTTAATCAACCCGAGTCTTCCTAAAAATTGTATTAACCTGTATACGCTGCCTTTGAAGGTCACAATGAGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCAAAATGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 1671039-1670856 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044013.1 Methanothermobacter sp. THM-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================== ================== 1671038 23 95.7 30 G...................... TAACTCAAGAAGCTGCCATGAATGAACACT 1670985 23 100.0 29 ....................... CCATCCAGGGTGTACCATGAACTCCATGG 1670933 23 100.0 28 ....................... CCGGATGGAGGTTCAGGGAGTATATGAC 1670882 23 87.0 0 ......G.........T...G.. | C,AAC [1670860,1670866] ========== ====== ====== ====== ======================= ============================== ================== 4 23 95.7 29 TTTACACTTGAAATTGACCTCTC # Left flank : CCACCACAGTATTCTCTGGGGTCAGGTGATAGGTTTCAAGTGTAAATTTTCTTATTGAATCTATTAGATAAAAGTTTTTATTATTTATGTGTGTCAGCAGTATGATGGATGGTCTGTGAGACATGTTTTTCAAGTGTAAATGATACGTTCGGGTCCTGCCATCGATGAAAGGGTGGTCCATTTCAAGTGTAAAATTTCATTCTGTCCCTACCTATTGTCGGTGGGGCATCAGTTTCAAGTGTACTGAAATTCCATTAGTGAAGGGGTGGAGGGAGACATCCATTTCAAGTGTAATAGAATTTTGTTCTTTAGGGCTTCGAGAGAGACATCCATTTCAAGTGTAAGTATTAATGTAATAATTTTTGTAAATAAAATACGTTAATTTCAAGTGTATCCAGTGTAAGTTTTGTGAAGTCCTGAAGCATCCATACCTGAGGTGTCAGGGCCCACCCCTGATCCCAACGTGTTTTTATGCATTTAAAATGGGAAATTAATACGGA # Right flank : AGGTCACCGGTTACGGTAGCAGGGACTTGAAGGTGAAGTATTCTTCAGGAACTCTAAATTGTCAAGTGTTCACAGAATACATCTCATGTTTTTGGCAAATAGAATAAAAATGTGGATTTACAGATGAAATGCATCTCCAAAACCGGAAAATATAGTGGATGAAGGGTTCAGCCTAAACATACATGCTGTCATGTTCCCTTTTCTCATCACCGAACCTTTCCTGTATCATCCACATAACATGTAGCTTTGCCCTGAAAACCTTTTTTATAGTTGAAATCAACCTGTCCTTTGTGAGGCCGTCAAAGAATATCTCATCGGTCACAAGGTAACCGTTAAGGACATTTTCAGGGTGATCAAGCTGAAAATCAACCCCAAAACGGTTAATTGCAAATCGAATATCCCATAGGAACTCAGTCCTTTTAACCATGCTCATGTCCCGTATGCCTGCCTGGTGTTCAGGGCTCACGCTGGTGGCGCAGGCAATCAGAACCATATCCCTT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTACACTTGAAATTGACCTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //