Array 1 100369-101495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLP010000012.1 Escherichia coli strain Pk8592 NODE_12_length_118442_cov_141.485329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100369 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 100430 29 100.0 32 ............................. CATAATGAAATTGGCCTCAAATGAGGCCAATT 100491 29 96.6 32 ............T................ GAACTTGATCTGATTTGTGAATTTATTCGATC 100552 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 100613 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 100674 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 100735 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 100796 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 100857 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 100918 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 100979 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 101040 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 101101 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 101162 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 101223 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 101284 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 101345 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 101406 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 101467 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40370-39426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLP010000032.1 Escherichia coli strain Pk8592 NODE_32_length_49281_cov_136.669702, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40369 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 40308 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 40247 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 40186 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 40125 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 40064 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 40003 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 39942 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 39881 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 39820 29 100.0 32 ............................. GGATCTAACGCGCTGTCAAAATTCCGTGCTTT 39759 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 39698 29 96.6 32 A............................ CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 39637 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 39576 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 39515 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 39454 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59521-58472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLP010000015.1 Escherichia coli strain Pk8592 NODE_15_length_111574_cov_129.381409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59520 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 59460 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 59400 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 59340 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 59280 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 59220 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 59160 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 59100 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 59040 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 58980 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 58920 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 58859 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 58799 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 58739 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 58679 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 58619 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 58559 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 58499 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 65727-64857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLP010000015.1 Escherichia coli strain Pk8592 NODE_15_length_111574_cov_129.381409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65726 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 65666 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 65606 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 65546 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 65486 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 65426 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 65366 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 65306 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 65246 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 65186 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 65126 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 65066 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 65006 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 64946 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 64886 28 85.7 0 ....................T...C.CT | C,A [64860,64863] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //