Array 1 108111-106634 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYB01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2877 BCW_7508_1__paired__contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108110 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108049 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107988 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107927 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107865 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107804 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107743 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107682 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107621 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107560 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107499 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107438 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107377 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107316 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107255 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107194 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107132 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107029 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106968 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106907 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106846 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106785 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106724 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106663 29 96.6 0 A............................ | A [106636] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126224-124243 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYB01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2877 BCW_7508_1__paired__contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126223 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 126162 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 126101 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 126040 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125979 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125918 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125857 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125796 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125735 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125674 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125613 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125552 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125491 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125430 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125369 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125308 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125247 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125186 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125125 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125064 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125003 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124942 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124881 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124820 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124758 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124697 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124636 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124575 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124514 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124453 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124392 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124331 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124270 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //