Array 1 295096-288598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079822.1 Rothia mucilaginosa strain LPB0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 295095 29 100.0 32 ............................. ACCGGCGACCATGCCCACATGGGCGTTGCAGG 295034 29 100.0 32 ............................. AGGTCGGAGATTCAGTGACCTTGCAATCCACG 294973 29 100.0 32 ............................. CCCTCGCTGGGACACCCGAACGCGATTACCGG 294912 29 100.0 32 ............................. GGCTTCTTTTTCGGGTGAGAGAAACGCAAAAG 294851 29 100.0 32 ............................. AGCCTGTGGGTGTTTAGAACATCATCCTAGAC 294790 29 100.0 32 ............................. GTCACCGGGGAATGGGAAACCGTAAACACCAC 294729 29 100.0 32 ............................. CAAGAGCACAACGGTTTTATACCGGAGCTTAG 294668 29 100.0 32 ............................. CACAGGCCAGCCACAGGGCCAGCGGAGCAAAA 294607 29 100.0 32 ............................. CCACGGGTCGAAGTCCGCAGCTTCGACCGGAA 294546 29 100.0 32 ............................. GCGATTACCGGCGCGCTACCGCTATTCATGCG 294485 29 100.0 32 ............................. AGGTGACCCCCCGGGGTGCAACAGGTGACCCC 294424 29 100.0 32 ............................. AGGTCGCTAACACCCATTAGAATATTTCCGGT 294363 29 100.0 32 ............................. TAAGCGGATGAGAAGAGAAGGTGCTACAGAAT 294302 29 100.0 32 ............................. CGATGCCCTGCCGGACTCACTGCCACGACATC 294241 29 100.0 32 ............................. CTCACCGTCGAGGTTCAAAGATGCAGCGGCTG 294180 29 100.0 32 ............................. TCGCGCGGAGTCAACCGCTGGCTCTGCGCGTG 294119 29 100.0 32 ............................. GCCGCCTTCTCACGCATGAATGCGATATCAGC 294058 29 100.0 32 ............................. TTGTTGCCGTTAGTATTAGACCTCTGCGCTAG 293997 29 100.0 32 ............................. GCCGCCGGGGAATGGGAAACCGTAAACACCAC 293936 29 100.0 32 ............................. TACCGCGTCACCGTCTACGACTCACTCAGTGA 293875 29 100.0 32 ............................. CAAAGGTAGTTAGCGGGGTAAGCTCACGAAGC 293814 29 100.0 32 ............................. CCATGATAACGTTGGCCTGCATCCCCTGTTTC 293753 29 100.0 32 ............................. GTAACAGCGGACTCGCTGTTCAGTAGCGAGGA 293692 29 100.0 32 ............................. CGTCGCGGCTCGCGGTCTGAGGAGTCAAGGTG 293631 29 100.0 32 ............................. CATACGGTGCGCGGGGCGGTAATTACCTCAGA 293570 29 100.0 32 ............................. CCCCTGCTTGAGCTGGCCTACCACGGCGGCAT 293509 29 100.0 32 ............................. ACGGCAGAAAGGTTTGGGCTGCGTTAGCGCTG 293448 29 100.0 32 ............................. GGCAAACCATGCCTCGGCGGCGGTCTGCGTGA 293387 29 100.0 32 ............................. AGCGCCCGCAAGTTGGCGAAGGAACAGCGCCG 293326 29 100.0 32 ............................. GTTCCCGCAGCCACGGCGGCGCGGTCATGCTG 293265 29 100.0 32 ............................. ATGATGACCTCAATGGCTTCAGCAACTGCTAC 293204 29 100.0 32 ............................. GTCCCGGAGGAGGTATCCGTCCGAAGTACCAC 293143 29 100.0 32 ............................. TTTTGTACTTGTGACAAATATATAGTTCCTTG 293082 29 96.6 33 ............................A CCCAAGAATCAGACGGCAACCTGCGCAGGATGC 293020 29 100.0 32 ............................. GCAATTCGCACCCGCCTGAAGCGCCTCAATGA 292959 29 100.0 32 ............................. CAACCCGCGCCGATGTTCTCAGCAATGGAGCC 292898 29 100.0 32 ............................. ACCGCGCGCGTCAGCTTGTCCAGGTCAGGTTT 292837 29 100.0 32 ............................. AGCGCGCGAACTGAACCGACATAAGAAGGAGA 292776 29 100.0 32 ............................. GTATCGGCACCCTGTCGAGCTTTCATAACCCC 292715 29 100.0 32 ............................. GGCACCCGGACCCGCGTTATAGCCAGCCATGA 292654 29 100.0 32 ............................. GGTGGGGGTGCTGTCGTTGTCCCCTTTAGGGA 292593 29 100.0 32 ............................. CGACTTGACAAAATTCAAGAAGCCTTATATGA 292532 29 100.0 32 ............................. ACTGATACCCTATGCAGAGCGGCGCGGCTTGC 292471 29 100.0 32 ............................. CGACTTTGCGAGCTTCTGAATAGCCGAGTCCT 292410 29 100.0 32 ............................. AAAAAGCGGGTCGGCATGGCGAGCAGCTCCTG 292349 29 100.0 32 ............................. GTCACCGACGTGCCTATCCATATGCGCCTGAC 292288 29 100.0 32 ............................. GTCACCGACGTGCCTATCCATATGCGCCTGAC 292227 29 100.0 32 ............................. TGAATCTGTGGACGTTGTGACCGGCGAGGTCG 292166 29 100.0 32 ............................. GAAAAACCCACCCGGTGCGGGTGGGTCTGGTT 292105 29 100.0 32 ............................. AGAGAATGGCTCACGGGTGGAGAGGCAACCCA 292044 29 100.0 32 ............................. GGCCAGCTCTTCAGCAGCCTCAACCACCGCAA 291983 29 100.0 32 ............................. GCGCGGCAGACTCCAGAGCATTACGCGAGCTC 291922 29 100.0 32 ............................. ACTGGCGTGCTCTATGAAACCGGCACCGGCAT 291861 29 100.0 32 ............................. CAAGCTGTCCGATTCTCTGCTACTAGCCTATG 291800 29 100.0 32 ............................. AGCAAATCAGAAAAGGACATAACATCATGGCA 291739 29 100.0 32 ............................. CGATGCACTACAAAACCTTCATACCCGGCACA 291678 29 100.0 32 ............................. CATCGCGCGCGTCCCTGACGAACACCGCCAGA 291617 29 96.6 32 ............................G ACTTATGGTTCTGAAGTGGGCGGCAAGTCTGA 291556 29 96.6 32 ............................G TGACGGTCACCATGAGTGCCCATTCCTGGATG 291495 29 100.0 32 ............................. TGGCGTCAGTTCATCAAGTTCTGGGATGCAGA 291434 29 100.0 32 ............................. TGGGCGCCCTCTTCACCGCCAACGCTGAGGCA 291373 29 100.0 32 ............................. ACAGAAGATTCACCAACCCGGGGATTCAGAGC 291312 29 100.0 32 ............................. GCCGGTAGGGATGCACTGTTTAAGGCTGGCGA 291251 29 100.0 32 ............................. TTGGAAGTCCACGGCGATTTACACACCACAGC 291190 29 100.0 32 ............................. CACGCCGGGACGACCGCTAGAAGAAGTCCACT 291129 29 100.0 32 ............................. CCGGCGCTGGTTTACCGGAACACAAATTCAGG 291068 29 100.0 32 ............................. GGCGACCCCAACGTCACGCAGTCCGGTTATGT 291007 29 100.0 32 ............................. CTACCTGGAATGCGAAAGCAAGCCAGAACCGG 290946 29 100.0 32 ............................. GCCTACAATGAATTGGCTTCGGTGCTTGGTGC 290885 29 100.0 32 ............................. GCGGCGGCAACCTGCTCACCCAGCGAACCAGC 290824 29 100.0 32 ............................. ATCGGTAGCCTTTGCAGATGCCATAGTCTCAG 290763 29 100.0 32 ............................. CGTTCACAGTCGAACGACGATAGAACGAACGT 290702 29 100.0 32 ............................. TTCTTCTGTGGGAGGAGGAGTATGACCCCGCC 290641 29 100.0 32 ............................. CCTCGGATTGCTCTTGGTAAGCGATGCTCTGC 290580 29 100.0 32 ............................. GACGGCGAGGATGTATGGCATCTGATGGAGTC 290519 29 100.0 32 ............................. CAACCGAGAGGAACACTAAACCATGAAGATTA 290458 29 100.0 33 ............................. CCCCCGGTACGCCTCGCATATACTTACGGACTG 290396 29 100.0 32 ............................. CAACGGCAACGCCCAACGGGATTTGTGCACTG 290335 29 100.0 32 ............................. GCCGTGACCGGCATCAGGCTGCACCCCAAGAA 290274 29 100.0 32 ............................. CCCAAAGGGATACCGTCATAGTCCTGAATCTC 290213 29 100.0 32 ............................. CTCAACCTCGATTGACTGACCATAGGCGACGG 290152 29 100.0 32 ............................. CGGGCATTATGCGTCTAGTATCGGTATGTCGC 290091 29 100.0 32 ............................. AAGGCGCTCGCCACCCCCTCCCGCCCGCTCGG 290030 29 100.0 32 ............................. TTTCTCAGCTAGGGCAATGTTGTTTAGCGCCT 289969 29 100.0 33 ............................. GATTTGGTACCCCCCCCCTACCAATTCGTTACC 289907 29 100.0 32 ............................. AGCCCTAATCACCGACCCGCCCTACGGCATTA 289846 29 100.0 32 ............................. GCAAATAATGGACTTGCTAGGAATCCTACTAG 289785 29 100.0 32 ............................. CGCCTTCGCCCCTGTGATTCTCTGTCAGAACC 289724 29 100.0 32 ............................. CGCCTTCGCCCCTGTGATTCTCTGTCAGAACC 289663 29 100.0 32 ............................. GACCTGTTGGCACACCGGGTGAGCTTTGGTAC 289602 29 100.0 32 ............................. AGGCCATGAGACAGACCAGCATCAAAAAGCCG 289541 29 100.0 32 ............................. GTCTGCGTGGTCTCCGCGAAACCCTTGCGGGT 289480 29 100.0 32 ............................. CACGCGCTCATCCTGATCTTTTCGGCTGCCAG 289419 29 100.0 32 ............................. CCGTATGCGTGCTACTCGACTCCTCAATGATG 289358 29 93.1 32 ...T........................G GCGGGCACGTACCTCATCTTCATACTCGGCAA 289297 29 96.6 32 ...T......................... CAGAGGCAGGAGGCGAGCACGTGCCAGGTGAT 289236 29 93.1 32 ...T......T.................. GTCCCGGCTGACGTGATGATTGGCCTTGCTGG 289175 29 89.7 32 ...G....................C...T CGACTGGCTGGACATTCAGTCGCGAAAAACTG 289114 29 86.2 32 ...T........T.....A.........G GCGCTACGATATTCATATCAGCTAAATAAAGT 289053 29 89.7 32 ...T......T.................G TTCCGCCGCTCTGAAGCACGCGAGCTGTACAC 288992 29 86.2 32 ...T........T....A..........G TTCCTTTACTGCCAGGGTGAAATTTCCCTGTG 288931 29 89.7 32 ...T........T...............G GGACGCAGGGGATGGGTGGTGTCGGTTTTCGT 288870 29 89.7 32 ...T....T.T.................. GCCGTTGCACATGCCGCCGCTGCGGGGACGTA 288809 29 89.7 32 ...T....T...................G AGCTTAAGACGATGGTGATTCTGGGGTTAGGT 288748 29 86.2 32 ...T.........A...C..........G TTCGTTGAATGGTCGGTTCTGGACGGTCAGGA 288687 29 86.2 32 ...T.........A.......G......G TTCGTTGAATGGTCGGTTCTGGACGGTCAGGA 288626 29 86.2 0 ...T.........A.......G...T... | ========== ====== ====== ====== ============================= ================================= ================== 107 29 98.6 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GTTTGTGGAATGAGCAGGGTGAGGCTCAGCGCGGTGGCATGAATTATGGGGATGGAGGGGTGGACTGATGATTGTTATTGTTTTGTCTGCTTGTCCGGTGAGTCTTCGTGGTGATTTGACGAAGTGGCTTTTGGAGATTAATCCTGGCGTGTTTGTGGGGCGTGTGAGTGCCAGGATTCGTGAGAAGTTGTGGGCACGTGTGTTGGAGTCGGGTGGCACTGGTAGGGCGACGATGGTGTTTCCGGAGGATAATGAGCAGCGGCTTGAGTTTCGGGTGAATAATGCGGATTGGGAGCCTGTCGACTTTGAGGGTGTGAAGCTGATTTATCGCCCGGTGGTTCGCAAAACGGTGCCAAAATCTGGGTGGAGTAAGGCGAGTAAGTATCGCCGTGCTCGTCGTGGTTAAGAATAACTGTTTATCGTGTATTCTGGATACAGGCTCTGGCTCCAAAGTGATTCTATTTTGCTGATGTAGGGGGTAAAGCCCCATGTCAGCAAGT # Right flank : CCTCCTAGGCTCCCGGCTGGAGAGGGGAGCCGATGTTCCTCGTACTAGCAGGGGTTAAGCTTCGGCGTTGCCGGATTCGTTGTTGCCGCCCACTTCTCGCTGGTCTTGGCTGGGTTTACTCTCAGAGCCTGCAGGGCATCTAGAAATGGCGATGAAAGCCGAATACCTGTAGTAGGTCTTGGCGTCTGGTTGTTTGAGCTGGTAGGCATTATAGTCGTGACTAATACTGTCCAGATGGTTGGCTGCTTATTGACTGCAAGAATATAAAAACCCCGGTGCCACCGCCCAAAAACAGGCGTGGGAAAAGGCACCGGGGACCCCCAAACGAGAGGGACAGAAGGGCGTGAAATCATGGAAACACGCAGAAGAAAGGATAACAGCAATGGCAAAGAAAACGGAACACACGGAACACGAATTCACCGTGTATTTGACGAGTTCAGAAGTTGCAAAAATGGCCGGGGTAGAGGTCGCGACCGTGAACAGCGCGCGCAAGAAGGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //