Array 1 734-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESB01000047.1 Clostridium botulinum BKT028387 contig00047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 733 28 79.3 194 A......A..........A.C.-....T. TATTGATTTTGCAGTGAACCTCTAGTAGTGTTTTTGCTAAATAATTAAAACAAGCTTGTAAACTACTTATATCAACGTTTGTATAGATTTACTATAAAAAATGGCTCACTGCAAAATTTAGTGATTTTATGTTAAAAAGGTTATAAAGGATATGAAGTTATATAGTATTATGAAGATAATAGAAGGAAAATGGG A,T [721,729] 509 29 100.0 38 ............................. TTGGAGATAAAGTAAGAATAGCATTAAGTGGTAATAAA 442 29 100.0 37 ............................. TCAGAAGGTGTTATAGAAATAGGTGATAATAATTTTG 376 29 100.0 40 ............................. GTATCTAAATCAATGTTAGATTTGGGACCAGAATGGTTAG 307 29 100.0 36 ............................. CTGTCTTTTATATCACCGTTATTATTAAAAGTAATT 242 29 100.0 36 ............................. TGCACCTTCTAGCAACTTGCTGAGTTGACCCTGAGC 177 29 100.0 36 ............................. ATAGCGGAAGTAACGATTGTCATTCCAACTGTTTTA 112 29 100.0 37 ............................. TACCTTTACACAACCAGAATTTTTATTAAATTTAAAC 46 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 9 29 97.7 57 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : TATTCTGATATGCTAGTTGGTTTAGGTAATCTTAATATAAATGAAACTGCTAAATTCAATATTAGTGATGAGGCTACAGAATTTAGAGATTATTCTATAAAAGAAGCTGAGGTTTTAGGTGTTGAAGAGGAGCTTTCAAAAGAAGATAAATTTAATAGAATAAAAACTGCTCTACAAGGATTGCAATATTTAAGTCTAAAATCTAACCAATCAAATTATTTAACAGATACTATGCCTAAAGTTGTTATATTGGGTGAATACAAATGGGGAAATAATGTATTTCAAGGATTGATAAATAAAGATGGAGTAAATATAAAAGGTCTTGAGGAAGTAATTGAGGAATATGATAATTTTAGAAATAGTAAGATTTGGATAGGCGTTAGTAATAGAATTTTAAATAAAAACTTTGAAAATGTGAAAGAGGATCTTGAAGAAGCATTTAAGGATTGTGATGATGTTGTAATAGGTAGTGTAAAGAATGCTTTTGATGGATATTTAGA # Right flank : GTTGTATAAAACTTGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 32-393 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESB01000048.1 Clostridium botulinum BKT028387 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 32 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 100 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 167 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 234 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 299 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 365 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : TAAAACTTTAATATTTAACATTTTAATTTCCG # Right flank : TAATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 3345-5218 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESB01000048.1 Clostridium botulinum BKT028387 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3345 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 3412 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 3477 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 3544 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 3609 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 3673 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 3739 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 3804 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 3871 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 3936 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 4001 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 4070 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 4136 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 4201 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 4266 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 4332 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 4398 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 4464 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 4530 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 4596 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 4661 29 100.0 38 ............................. ACTTGATGTCCAGCTCCACCTAGTCGCATACCCATTGC 4728 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 4794 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 4861 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 4927 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 4992 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 5058 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 5125 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 5190 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : TCATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 6330-6686 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESB01000048.1 Clostridium botulinum BKT028387 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 6330 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 6395 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 6461 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 6527 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 6593 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 6657 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTTGTTAGTTTCATTTGGCTTATGTTGTTAATAGACGAGCTTACATATAGCTATCATATATACTGTAGAATAAGTGAAATTATAGGACTTACTTCACAAATATATATTTTAATAAAATATATCAAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTG # Right flank : TTTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //